pypi scikit-image 0.25.0rc1
v0.25.0rc1
on Python PyPI

one month ago

scikit-image 0.25.0rc1

We're happy to announce the release of scikit-image 0.25.0rc1!

New Features

  • Add the new Grey-Level Co-occurrence Matrix (GLCM) properties "mean", "variance", "standard deviation" and "entropy" to skimage.feature.texture.graycoprops (#7375).

API Changes

  • Complete the deprecation of and remove skimage.feature.plot_matches. Use skimage.feature.plot_matched_features going forward (#7487).
  • Deprecate skimage.io.imshow, skimage.io.imshow_collection and skimage.io.show. Please use matplotlib, napari, etc. to visualize images (#7508).

Enhancements

  • Improve numerical stability of skimage.morphology.local_minima for extremely small floats (#7534).

Bug Fixes

  • Ensure that skimage.morphology.remove_objects_by_distance doesn't fail if the given integer dtype cannot be safely cast to the architecture specific size of intp, e.g. on i386 architectures (#7453).
  • Fix degeneracy in skimage.draw.ellipsoid_stats when all semi-axes have the same length (#7473).
  • Prevent skimage.morphology.thin from accidentally modifying the input image in case it is of dtype uint8 (#7469).
  • Fix numerical precision error in skimage.measure.ransac. In some cases, ransac was stopping at the first iteration (#7065).
  • Fix numerical precision error in skimage.measure.ransac; very small probabilities lead to -0 number of max trials (#7496).

Documentation

  • In skimage.morphology.skeletonize, clarify the expected image dtypes and how objects of different intensities are handled (#7456).
  • Fix example section in docstring of skimage.feature.graycomatrix (#7297).
  • Use conda-forge consistently in instructions for setting up the development environment (#7483).
  • Use new CITATION.cff instead of CITATION.bib (#7505).
  • Use correct spin test --coverage in contribution guide (#7515).
  • Tweak advice to new developers; remove AI warning (#7522).
  • Rework installation instructions (#7434).
  • Improve the description of the image parameter in skimage.restoration.richardson_lucy (#7477).
  • Account for empty arrays when counting segments per contour level in gallery example "Segment human cells (in mitosis)" (#7551).

Infrastructure

  • Fix CI tests with minimal dependencies and make dependency resolution more robust (#7462).
  • Add CI to test scikit-image against free-threaded Python 3.13 (#7463).
  • Address autosummary.import_cycle warning (#7486).
  • Temporarily exclude Dask 2024.8.0 to fix CI (#7493).
  • Uncomment currentmodule directive again (#7492).
  • Add CI to release nightly free-threaded wheels (#7481).
  • Update deprecated configuration (#7501).
  • Bump spin version to 0.11 (#7507).
  • Ensure only a single type: label is present in PRs (#7512).
  • Update pydata-sphinx-theme (#7511).
  • Fix OpenBLAS s_cmp unresolved symbol error, update Emscripten CI testing (#7525).

Maintenance

  • Verify all artifacts that have been attested by looping over them in CI (#7447).
  • Update circleci-artifacts-redirector-action that moved to the Scientific Python org (#7446).
  • Use NumPy 2.0 stable to build packages (#7451).
  • FIX Use python3 in Meson version script shebang (#7482).
  • Refactored tests for skeletonize (#7459).
  • Remove unused and deprecated dependency pytest-runner (#7495).
  • Exclude imageio 2.35.0 that forces numpy downgrade (#7502).
  • Don't test thresholding funcs for Dask compatibility (#7509).
  • Fix build dependency (#7510).
  • Add sdist check to spin sdist (#7438).
  • Reorder items in TODO list (#7519).
  • Use Rotation.from_euler to compute 3D rotation matrix (#7503).
  • Update spin (0.12) (#7532).
  • Import lazy_loader as private symbol in top-level namespaces (#7540).
  • Set -DNPY_NO_DEPRECATED_API=NPY_1_23_API_VERSION on build (#7538).
  • Update up/download artifact version (#7545).
  • Don't use deprecated io.show and io.imshow (#7556).
  • Hide traceback inside assert_stacklevel (#7558).
  • Update pre-commit versions (#7560).
  • Drop Python 3.9 support (#7561).
  • Update minimum dependencies (SPEC 0) (#7562).
  • Remove unused PYX files in io/_plugins (#7557).
  • Support Python 3.13 (#7565).
  • During deprecation cycles, preserve the value of deprecated parameters that don't have a new parameter as a replacement (#7552).
  • Fix missing minigalleries by using full names in directives (#7567).
  • Build Python 3.13 wheels (#7571).
  • Update TODO (#7573).
  • Remove deprecated skeletonize_3d (#7572).
  • Remove deprecated gaussian output parameter (#7574).

Contributors

21 authors added to this release (alphabetically):

20 reviewers added to this release (alphabetically):

These lists are automatically generated, and may not be complete or may contain duplicates.

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