What's Changed
- add slice_key kwarg to resolvi prepare_data_kwargs by @AdnanAbouelela in #9
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #13
- Execute scanorama tests sequentially by @Marius1311 in #14
- fix: relax pyarrow dependency for compatibility with RAPIDS by @Marius1311 in #16
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #15
- chore: bump cookiecutter-scverse template to v0.7.0 by @Marius1311 in #20
- docs: add agent-neutral repo guides (AGENTS.md, REVIEW_GUIDE.md) by @Marius1311 in #22
- fix: drop the lightning git redirect by @Marius1311 in #25
- fix: take ResolVI and scVIVA from scviva-tools by @Marius1311 in #26
- fix: require pandas<3 by @Marius1311 in #28
- fix: install scarches from master for anndata 0.13 by @Marius1311 in #29
- fix: nest dotted W&B summary keys in scIBAggregator by @Marius1311 in #30
- fix: stop Harmony from using every core of the machine by @Marius1311 in #34
- feat: add SIMVIMethod by @Marius1311 in #33
- fix: provide pkg_resources for louvain in the cpu extra by @Marius1311 in #32
- chore: pre-commit autoupdate by @Marius1311 in #36
- chore: update cookiecutter-scverse template to v0.8.0 by @Marius1311 in #37
- docs: point SIMVI install hints at quadbio/simvi by @Marius1311 in #40
- fix: cap bokeh below 4 in the cpu extra by @Marius1311 in #41
- Bump the actions-deps group across 1 directory with 5 updates by @dependabot[bot] in #39
- add option to filter runs by @AdnanAbouelela in #17
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #42
- ci: speed up tests and build annoy portably by @Marius1311 in #43
- docs: link type hints by public name and build with -W by @Marius1311 in #44
- feat: scVIVAMethod takes slice_key, falling back to batch_key by @AdnanAbouelela in #10
- fix: exclude umap-learn 0.6.0, which breaks evaluate_scib by @Marius1311 in #47
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #46
- Bump astral-sh/setup-uv from 10.3.2 to 10.3.3 in the actions-deps group by @dependabot[bot] in #45
- ci: cut Actions minutes by @Marius1311 in #48
New Contributors
- @AdnanAbouelela made their first contribution in #9
- @dependabot[bot] made their first contribution in #39
Full Changelog: v0.1.1...v0.2.0