Release notes for sbmlutils 0.10.1

We are pleased to release the next version of sbmlutils including the following changes.

Features

create_model writes additional serializations of the created model next to the SBML file for inspection: create_antimony=True writes the antimony notation to *.ant and create_markdown=True writes the markdown overview of the ODE system (parameters, initial conditions, assignments and ODEs with their units) to *.md. Both are off by default, the paths of the written files are reported as antimony_path and markdown_path on the FactoryResult
sbml_to_antimony in sbmlutils.io converts an SBML file or string to antimony, the inverse of parser.antimony_to_sbml
sbmlutils.metadata re-exports PBPKO, the ontology of physiologically based pharmacokinetic models of pymetadata, next to BQB, BQM and SBO, so a model definition only imports from sbmlutils

the reaction equation of the report (SBMLDocumentInfo) raised for a variable stoichiometry: SBML Level 3 expresses a stoichiometry set by an initial assignment or a rule as NaN on the species reference, which the equation shows as the id of the species reference (v4_x x, or ? without an id). Negative stoichiometries other than -1 rendered with a doubled sign (--2.5 x). The unset stoichiometry is read from libsbml, which is 1.0 in Level 2 and NaN in Level 3, instead of a hard-coded 1.0
API_EXAMPLES_MODEL listed the distrib models twice, explicitly and through the example ids, so sbml4humans warned about duplicate example ids on startup. tests/test_resources.py checks that every example model exists and is listed once

the antimony and markdown serialization of create_model and sbml_to_antimony are described in Model creation, Reading and writing and Converters

pymetadata >= 0.6.1 is required
the egg-info of editable installs is ignored by git
the citation in CITATION.cff and README.md refers to the Zenodo record of the 0.10.0 release, and the documentation start page carries the citation as well

Your sbmlutils team