PHATE v0.2.8 adds plotting utilities:
phate.plot.scatter2d: 2D scatterplotphate.plot.scatter3d: 3D scatterplotphate.plot.rotate_scatter3d: rotating 3D scatterplot (gif or mp4)
All plotting functions accept either data or a PHATE object as input. The color vector c can be continuous or categorical, and need not be numeric. Legends / colorbars are generated with randomized point order on the canvas.