Changes
🚀 Features
- Perturbation space - add/subtract (#328) @AlejandroTL
- Perturbation space - pseudobulk, discriminative classifier, clustering (#316) @AlejandroTL
- add n_jobs support for pairwise distance computation (#305) @XinmingTu
🐛 Bug Fixes
- fix initial MCMC values (#302) @johannesostner
- Fix docs CI (#303) @Zethson
- fixed the output_file_name of frangieh_2021_raw (#321) @XinmingTu
📦 Dependencies
- [DEPENDABOT]: Bump rich from 13.5.1 to 13.5.2 (#329) @dependabot
- [DEPENDABOT]: Bump ipywidgets from 8.0.7 to 8.1.0 (#330) @dependabot
- [DEPENDABOT]: Bump sphinx from 7.1.1 to 7.1.2 (#331) @dependabot
- [DEPENDABOT]: Bump pyupgrade from 3.9.0 to 3.10.1 (#324) @dependabot
- [DEPENDABOT]: Bump furo from 2023.5.20 to 2023.7.26 (#325) @dependabot
- [DEPENDABOT]: Bump flake8 from 6.0.0 to 6.1.0 (#326) @dependabot
- [DEPENDABOT]: Bump plotnine from 0.12.1 to 0.12.2 (#319) @dependabot
- [DEPENDABOT]: Bump types-requests from 2.31.0.1 to 2.31.0.2 (#320) @dependabot
- [DEPENDABOT]: Bump arviz from 0.15.1 to 0.16.0 (#318) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.7 to 1.8.8 (#317) @dependabot
- [DEPENDABOT]: Bump pyupgrade from 3.8.0 to 3.9.0 (#313) @dependabot
- [DEPENDABOT]: Bump scvi-tools from 1.0.0 to 1.0.2 (#314) @dependabot
- [DEPENDABOT]: Bump ott-jax from 0.4.1 to 0.4.2 (#315) @dependabot
- [DEPENDABOT]: Bump scipy from 1.11.0 to 1.11.1 (#308) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 (#306) @dependabot
- [DEPENDABOT]: Bump pyupgrade from 3.7.0 to 3.8.0 (#307) @dependabot
- [DEPENDABOT]: Bump mypy from 1.4.0 to 1.4.1 (#299) @dependabot
- [DEPENDABOT]: Bump scipy from 1.10.1 to 1.11.0 (#298) @dependabot
- [DEPENDABOT]: Bump scvi-tools from 0.20.3 to 1.0.0 (#293) @dependabot
- [DEPENDABOT]: Bump pyupgrade from 3.6.0 to 3.7.0 (#292) @dependabot
- [DEPENDABOT]: Bump pyupgrade from 3.4.0 to 3.6.0 (#280) @dependabot
- [DEPENDABOT]: Bump rich from 13.3.5 to 13.4.1 (#281) @dependabot
- [DEPENDABOT]: Bump decoupler from 1.3.4 to 1.4.0 (#282) @dependabot
- [DEPENDABOT]: Bump sphinx-last-updated-by-git from 0.3.4 to 0.3.5 (#276) @dependabot
- [DEPENDABOT]: Bump requests from 2.30.0 to 2.31.0 (#275) @dependabot
- [DEPENDABOT]: Bump numpyro from 0.11.0 to 0.12.1 (#278) @dependabot
- [DEPENDABOT]: Bump pre-commit from 3.3.1 to 3.3.2 (#272) @dependabot
- [DEPENDABOT]: Bump codecov/codecov-action from 3.1.3 to 3.1.4 (#273) @dependabot
- [DEPENDABOT]: Bump furo from 2023.3.27 to 2023.5.20 (#271) @dependabot
- [DEPENDABOT]: Bump scvi-tools from 0.19.0 to 0.20.3 (#270) @dependabot
- [DEPENDABOT]: Bump typeguard from 3.0.2 to 4.0.0 (#265) @dependabot
- [DEPENDABOT]: Bump plotnine from 0.10.1 to 0.12.1 (#263) @dependabot
- [DEPENDABOT]: Bump mypy from 1.2.0 to 1.3.0 (#264) @dependabot
- [DEPENDABOT]: Bump numba from 0.56.4 to 0.57.0 (#259) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 (#257) @dependabot
- [DEPENDABOT]: Bump safety from 2.3.4 to 2.3.5 (#258) @dependabot
- [DEPENDABOT]: Bump protobuf from 4.22.3 to 4.22.4 (#260) @dependabot
- [DEPENDABOT]: Bump protobuf from 3.20.1 to 4.22.3 (#250) @dependabot
- [DEPENDABOT]: Bump rich from 13.3.4 to 13.3.5 (#251) @dependabot
- [DEPENDABOT]: Bump coverage from 7.2.3 to 7.2.5 (#252) @dependabot
- [DEPENDABOT]: Bump codecov/codecov-action from 3.1.2 to 3.1.3 (#246) @dependabot
- [DEPENDABOT]: Bump sphinx from 6.1.3 to 6.2.0 (#248) @dependabot
- [DEPENDABOT]: Bump pygments from 2.15.0 to 2.15.1 (#247) @dependabot
- [DEPENDABOT]: Bump safety from 2.3.4 to 2.3.5 (#249) @dependabot
- [DEPENDABOT]: Bump sphinx-gallery from 0.10.1 to 0.13.0 (#241) @dependabot
- [DEPENDABOT]: Bump scikit-misc from 0.1.4 to 0.2.0 (#242) @dependabot
- [DEPENDABOT]: Bump codecov/codecov-action from 3.1.1 to 3.1.2 (#239) @dependabot
- [DEPENDABOT]: Bump adjusttext from 0.7.3 to 0.8 (#243) @dependabot