Changes
🚀 Features
- Improve CI test setup & speed up mixscape (#757) @Zethson
- Speed up mixscape (#756) @Zethson
- Optimize mixscape (#735) @Zethson
- Cleaner mixscape (#746) @eroell
- Speedup Mixscape's lda function (#754) @eroell
- skip milotests properly & cache metadata (#752) @Zethson
- Sparse threshold max assignment (#744) @Zethson
- Speedup import times (#743) @stefanpeidli
- Add sparse threshold guide assignment & fix docstrings (#737) @Zethson
- More robust download (#721) @Zethson
- Support Python 3.13 (#720) @Zethson
- PRISM drug response metadata annotation (#716) @Lilly-May
- improve CellLine metadata module UX (#717) @JiriBruthans
- Switch from ete3 to ete4 (#618) @dengzq1234
- Move pynndescent import out of for-loop (#761) @eroell
- Cleaner CinemaOT (#745) @eroell
🐛 Bug Fixes
- Change how guide assignment model saves params from uns to var (#758) @stefanpeidli
- A ton of doc improvements & fix mudata warnings & Augur interface (#759) @Zethson
- Change cell_wise_metric from "sqeuclidean" to "euclidean" for edist (#733) @stefanpeidli
- Check only for numeric in statsmodels (#725) @grst
- Remove leidenalg from requirements (#729) @Zethson
- Remove pyenchant (#728) @Zethson
- Fix coda plot axes (#739) @mschilli87