What's Changed
- better skill discovery by @HendricksJudy in #483
- improvements and refactorings across the codebase, focusing on skill packaging and validation, Unicode output support, skill registry robustness, and defensive programming. by @HendricksJudy in #487
- robustness and user-friendliness of the single-cell analysis skills documentation by @HendricksJudy in #488
- Fix: Correct 'X_harmony' KeyError in lazy_function, lazy_checkpoint and by @Aegon8719 in #493
- Fix highly_variable_features mask not updating after HVG selection by @Starlitnightly in #497
- Fix KeyError in ov.pl.embedding when use_raw=True by @Starlitnightly in #498
- Fix ValueError in VIA pruning_clustergraph: correct mask array size by @Starlitnightly in #499
- Fix fq_data_preprocess bug #501: Add paired/single-end data type support and improve tool checks by @zhiluo20 in #505
- Real-world prompt library for the
ov.Agentby @HendricksJudy in #502 - Robust filesystem-based context management by @HendricksJudy in #507
- Bug fix and function improvement by @zhiluo20 in #510
- feat(space): add FlashDeconv as third deconvolution method by @cafferychen777 in #519
- Restrict pandas version to <3.0.0 by @DBinary in #529
- OV Agent backend improvements by @HendricksJudy in #530
- Bulk Alignment Optimization and Reconstruction by @zhiluo20 in #531
- Generate multi-sample count matrix CSV instead of per-sample TXT outputs by @zhiluo20 in #533
- fix: handle missing gene group colors in dotplot by @Starlitnightly in #534
- Refactor alignment module: extract CLI utilities and add bulk RNA-seq pipeline by @HendricksJudy in #535
- Integrate BioContext MCP for real-time external database queries by @HendricksJudy in #537
- Revert "Integrate BioContext MCP for real-time external database queries" by @HendricksJudy in #539
New Contributors
- @cafferychen777 made their first contribution in #519
Full Changelog: v1.7.8...v1.7.9