omicverse 1.6.6

v1.6.6

on Python PyPI

Pl Module

• Fixed the 'celltyep_key' error of ov.pl.cpdb_group_heatmap #109
• Fixed an error in ov.utils.roe when some expected frequencies are less than expected value.
• Added cellstackarea to visual the Percent stacked area chart of celltype in samples.

Single Module

• Fixed the bug of ov.single.cytotrace2 when adata.X is not sparse data. #115, #116
• Fixed the groupby error in ov.single.get_obs_value of SEACells.
• Fixed the error of cNMF #107, #85
• Fixed the plot error when Pycomplexheatmap version > 1.7 #136

Bulk Module

• Fixed an key error in ov.bulk.Matrix_ID_mapping
• Added enrichment_multi_concat in ov.bulk to concat the result of enrichment.
• Fixed the pandas version error in gseapy #137

Bulk2Single Module

• Added adata.var_names_make_unique() to avoid mat shape error if gene not unique. #100

Space Module

• Fixed an error in construct_landscape of ov.space.STT
• Fixed an error of get_image_idx_1D in ov.space.svg #117
• Added COMMOT to calculate the cell-cell interaction of spatial RNA-seq.
• Added starfysh to deconvolute spatial transcriptomic without scRNA-seq (#108)

PP Module

• Updated constraint error of ov.pp.mde #129
• Fixed type error of float128 #134