omicverse 1.6.4

v1.6.4

on Python PyPI

Bulk Module

• Optimised pyGSEA's geneset_plot visualisation of coordinate effects
• Fixed an error of pyTCGA.survival_analysis when the matrix is sparse. #62, #68, #95
• Added tqdm to visualize the process of pyTCGA.survial_analysis_all
• Fixed an error of data_drop_duplicates_index with remove duplicate indexes to retain only the highest expressed genes #45
• Added geneset_plot_multi in ov.bulk to visualize the multi results of enrichment. #103

Single Module

• Added mellon_density to calculate the cell density. #103

PP Module

• Fixed an error of ov.pp.pca when pcs smaller than 13. #102
• Added COMPOSITE in ov.pp.qc's method to predicted doublet cells. #103
• Added species argument in score_genes_cell_cycle to calculate the cell phase without gene manual input