omicverse 1.6.0

v1.6.0

on Python PyPI

Move CEFCON,GNTD,mofapy2,spaceflow,spatrio,STAligner,tosica from root to externel module.

space Module

• Added STT in omicverse.space to calculate the spatial transition tensor.
• Added scSLAT in omicverse.externel to align of different spatial slices.
• Added PROST in omicverse.externel and svg in omicverse.space to identify the spatially variable genes and domain.

single Module

• Added get_results_rfc in omicverse.single.cNMF to predict the precise cluster in complex scRNA-seq/stRNA-seq
• Added get_results_rfc in omicverse.utils.LDA_topic to predict the precise cluster in complex scRNA-seq/stRNA-seq
• Added gptcelltype in omicverse.single to annotate celltype using large language model #82.

pl Module

• Added plot_spatial in omicverse.pl to visual the spot proportion of cells when deconvolution