omicverse 1.5.2

v1.5.2

on Python PyPI

bulk2single Module:

• Resolved a matrix error occurring when gene symbols are not unique.
• Addressed the interpolation issue in BulkTrajBlend when target cells do not exist.
• Corrected the generate function in BulkTrajBlend.
• Rectified the argument for vae_configure in BulkTrajBlend when cell_target_num is set to None.
• Introduced the parameter max_single_cells for input in BulkTrajBlend.
• Defaulted to using scaden for deconvolution in Bulk RNA-seq.

single Module:

• Fixed an error in pyVIA when the root is set to None.
• Added the TrajInfer module for inferring cell trajectories.
• Integrated Palantir and Diffusion_map into the TrajInfer module.
• Corrected the parameter error in batch_correction.

utils Module:

• Introduced plot_pca_variance_ratio for visualizing the ratio of PCA variance.
• Added the cluster and filtered module for clustering the cells
• Integrated MiRA to calculate the LDA topic