omicverse 1.4.14

v1.4.14

on Python PyPI

bulk module

• add mad_filtered to filtered the robust genes when calculated the network in ov.bulk.pyWGCNA module
• fix string_interaction in ov.bulk.pyPPI for string-db updated.

preprocess module

• change mode arguement of pp.preprocess, normalize|HVGs：We use | to control the preprocessing step, | before for the normalisation step, either shiftlog or pearson, and | after for the highly variable gene calculation step, either pearson or seurat. Our default is shiftlog|pearson.
• add ov.utils.embedding,ov.utils.neighbors, and ov.utils.stacking_vol
• add batch_key in pp.preprocess and pp.qc

utils module

• add plot_ConvexHull to visualize the boundary of clusters
• add weighted_knn_trainer and weighted_knn_transfer for multi adata integrate

single module

• fix the error of import of mofax