pypi gseapy 1.1.0
gseapy-1.1.0
on Python PyPI

latest releases: 1.3.1, 1.3.0, 1.2.1...
2 years ago

What's Changed

New:

  • Add gsva module: This is the Rust implementation of GSVA algorithm. #226

Fixed:

  • #211, Now, pheno_pos and pheno_neg can define with 
from gseapy import GSEA

gs = GSEA(data="./tests/extdata/Leukemia_hgu95av2.trim.txt",
                 gene_sets='KEGG_2016',
                 classes = "./tests/extdata/Leukemia.cls"
)
# set here
gs.pheno_pos = ...
gs.pheno_neg = ...
gs.run()
  • improvement for barplot #224. Specify colors for each group explicity 
barplot( ....,  color= {'KEGG_2021_Human': 'salmon', 'MSigDB_Hallmark_2020':'darkblue'})

Full Changelog: v1.0.6...v1.1.0

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