gseapy 0.9.5

gseapy-v0.9.5

on Python PyPI

Important
Please note : from version 0.9.5 on, GSEApy only works on Python 3.4+ and Python 2.x will no longer be supported. For a Python 2 version you can install v0.9.4.

• Now, set outdir=None, there will be not any output files on your hard disk. Usefull inside python console. #43

• GSEA,Prerank,ssGSEA api improvement

  • gene_sets now support input type: dict. This is usefull when use your own gene_sets builded in python console. gene_sets dict looks like this:

    gene_sets = {
    "gene_set_1": ["gene_A", "gene_B", ...],
    "gene_set_2": ["gene_B", "gene_C", ...],
    ...
    "gene_set_100": ["gene_A", "gene_T", ...]
    }

• enrichr api improvment

  • gene_sets now support input type: list, str. see details: here
  • fixed loop break when enrichr server block the connection if you have large amount of queries

• small bugs in ssgsea