Feat
- dataset: fold haplotypes into ploidy-1 union in variant decode (#222)
- dataset: reject haplotypes/annotated output under unphased_union (#222)
- dataset: report ploidy=1 and fold n_variants under unphased_union (#222)
- dataset: add unphased_union flag on Haps + with_settings (#222)
Fix
- dataset: keep n_variants int32 under unphased_union fold (#222)
Refactor
- variants: drop retired order-dependent germline-CCF inference (#222)
Perf
- threads: tolerate malformed GVL_NUM_THREADS at import (#221)
- variant-windows: single fused fetch for both-window decode (#221)
- flanks: fuse 3 ref-window fetches into 1 via flank slicing (#221)
- reference: dispatch get_reference kernel serial/parallel (#221)
- reference: dispatch fetch kernel serial/parallel by per-thread bytes (#221)
- threads: cap numba workers to cgroup cores + add dispatch predicate (#221)