Changelog

0.22.0 (2026-04-20)

Adds splicing functionality. Major thanks to @bschilder for his help on this!

SVAR support passes all tests
SVAR support passes all tests
add members to conveniently inspect dataset splicing info.
move indices and transformation to torch dataset/dataloader API since these are generally never needed outside that context. feat: fully functional zero-copy splicing mechanics. fix: bug in rev and rev comp causing garbage output.
wip: testing spliced return values
initial prototype for splicing.

scope RUSTFLAGS rpath to osx-arm64 only
support osx-arm64, add contributing instructions
enable cargo test for PyO3 extension crate
correct ploidy interleaving in _cat_length
pack ak.where results in _rc to prevent buffer leak
make sure exonic filter gets applied. style: adhere to pre-commit
exons are already in reverse order for negative stranded genes
virtual indexing for splice indexer
data corruption when rc_helper is parallelized
map contig names appropriately for bounds checking on ds regions + ref
continue migrating to seqpro Ragged, enable logger at module level, add warnings about potential reference genome mismatches
add spanning dels to test and fix hap ilens for this case
variant index -> variant info mapping
add spanning dels to test and fix hap ilens for this case
parsing splice info and returning single item instead of list
update spliced_bed in with_settings for splice_info
getitem type annotations for StrIdx
spliced i2d_map

[main 3d95d85] bump: version 0.21.4 → 0.22.0
2 files changed, 36 insertions(+), 1 deletion(-)