What's Changed
- refactor: derive the _schema automatically by @project-defiant in #941
- test: improve fixture definition by constraining dataset IDs by @ireneisdoomed in #954
- fix: repair SusieFinemapperStep to work with new SL schema and fix lo… by @Daniel-Considine in #957
- chore: update poetry to version 2 by @ireneisdoomed in #969
- chore: clean documentation page about version engine by @project-defiant in #960
- fix: updating info in finngen study index ingestion by @Daniel-Considine in #972
- fix(
isProteinCoding): get all overlapping genes from the variant index by @ireneisdoomed in #948 - fix: skip leading 'v' in docker tag by @project-defiant in #975
- refactor: remove gene_index step by @vivienho in #946
- feat(qtls): flagging trans QTL credible sets by @DSuveges in #973
- chore: multiple python version support with latest pyspark and hail by @project-defiant in #974
- chore: bump pycln version by @project-defiant in #978
- chore: pre-commit autoupdate by @pre-commit-ci in #976
- chore: revert pre-commit update (a99ca84) by @ireneisdoomed in #980
- feat(l2gmodel): store features list metadata as instance attribute by @ireneisdoomed in #979
- chore: removing symbols from QTL study identifiers by @DSuveges in #971
- build(deps): update google-cloud-storage requirement from <2.15.0,>=2.14.0 to >=2.14.0,<3.1.0 by @dependabot in #986
- fix: tweak spark session builder to fix type hints by @Daniel-Considine in #982
- build(deps): update numpy requirement from <1.27.0,>=1.26.4 to >=1.26.4,<2.3.0 by @dependabot in #985
- feat: labels for dataproc in dev mode by @project-defiant in #987
- build(deps): update scipy requirement from <1.12.0,>=1.11.4 to >=1.11.4,<1.16.0 by @dependabot in #983
- feat: FoldX predicted energies in variant annotation by @DSuveges in #947
- fix: foldX normalisation to cover full range by @DSuveges in #989
- feat: implement posterior prob filter for COLOC at small overlaps N<10 by @xyg123 in #977
- chore: trigger release process by @github-actions in #961
Full Changelog: v2.0.1...v2.1.0