What's Changed
✨ Feature
- [config] 24.06 data release fixes (#639) @Szymon Szyszkowski
- credible set quality filtering (#640) @Daniel-Considine
- enable interface with gcp secrets manager (#635) @Irene López
- adding locus-breaker clumping method (#634) @Daniel Suveges
- [spark-helpers] enforce schema of returned objects (#617) @Daniel Suveges
- [qtl] ingest credible sets from single cell derived QTLs (#630) @Irene López
- [data_release] preparation for 24.06 data release (#633) @Szymon Szyszkowski
- [config] extract gwas_significance parameter to step configuration (#628) @Szymon Szyszkowski
- [config] gnomAD steps configuration extraction and versioning (#620) @Szymon Szyszkowski
- fine-mapping simulations class (#618) @Yakov
🐛 Fix
- [L2GPrediction] schema validation (#642) @Szymon Szyszkowski
- [docs] fixed typo in l2g_prediciton schema page (#629) @Szymon Szyszkowski
- [SummaryStatistics] fix in sanity_filter (#623) @Yakov
- [susie_finemapper] fix in the fine-mapper in case of sum stat imputation is False (#627) @Yakov
- [susie_finemapper] correct syntax for saving the logs df (#625) @Kirill Tsukanov
- [ld] correct syntax for the static method (#624) @Kirill Tsukanov
- [docs] update roadmap.md (#622) @buniello
- [spark helpers] sorter function updated to avoid crash (#613) @Daniel Suveges
🏗 Build
- [deps-dev] bump dbldatagen from 0.3.5 to 0.4.0 (#637) @dependabot[bot]
- [deps] bump scikit-learn from 1.4.0 to 1.5.0 (#638) @dependabot[bot]
- [deps-dev] bump ipython from 8.24.0 to 8.25.0 (#636) @dependabot[bot]
- [deps] bump wandb from 0.16.2 to 0.17.0 (#606) @dependabot[bot]
- [deps-dev] bump pep8-naming from 0.13.3 to 0.14.1 (#616) @dependabot[bot]
- [deps] bump typing-extensions from 4.11.0 to 4.12.1 (#632) @dependabot[bot]
- [deps] use pandas[gcp, parquet] (#626) @Kirill Tsukanov