Changes
🚀 Features
- Add Synthea dataset (#510) @namsaraeva
-
- Added tiny examples to every function (#498) @namsaraeva
- add a title parameter (#494) @xinyuejohn
- Changed the hue of grey (#493) @namsaraeva
- Logger info message when writing to .h5ad files (#458) @namsaraeva
- Modified docstrings (#533) @namsaraeva
- Added examples to missing modules (#531) @namsaraeva
- Allow Python 3.11 (#523) @Zethson
- Add test_kmf_logrank (#516) @Zethson
- Add scget functions (#484) @Zethson
- Add FHIR parsing support (#463) @Zethson
- Add new tutorial & switch to python 3.10 (#454) @Zethson
- Add docs group (#437) @Zethson
- Add thefuzz (#434) @Zethson
🐛 Bug Fixes
- Fix CI (#524) @Zethson
- Error message and minor fixes, issue #447 (#504) @namsaraeva
- fix quality control (#495) @xinyuejohn
- Fix MacOS CI (#435) @Zethson
🧰 Maintenance
- Add test_kmf_logrank (#516) @Zethson
- Add scget functions (#484) @Zethson
- Add FHIR parsing support (#463) @Zethson
- Add new tutorial & switch to python 3.10 (#454) @Zethson
📦 Dependencies
- [DEPENDABOT]: Bump pandas from 2.0.1 to 2.0.2 (#535) @dependabot
- [DEPENDABOT]: Bump furo from 2023.3.27 to 2023.5.20 (#536) @dependabot
- [DEPENDABOT]: Bump deep-translator from 1.10.1 to 1.11.1 (#537) @dependabot
- [DEPENDABOT]: Bump pre-commit from 3.3.1 to 3.3.2 (#530) @dependabot
- [DEPENDABOT]: Bump sphinx-last-updated-by-git from 0.3.4 to 0.3.5 (#529) @dependabot
- [DEPENDABOT]: Bump types-requests from 2.30.0.0 to 2.31.0.1 (#528) @dependabot
- [DEPENDABOT]: Bump requests from 2.30.0 to 2.31.0 (#526) @dependabot
- [DEPENDABOT]: Bump numba from 0.56.4 to 0.57.0 (#520) @dependabot
- [DEPENDABOT]: Bump codecov/codecov-action from 3.1.3 to 3.1.4 (#519) @dependabot
- [DEPENDABOT]: Bump sphinxext-opengraph from 0.8.1 to 0.8.2 (#512) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 (#511) @dependabot
- [DEPENDABOT]: Bump sphinx-copybutton from 0.5.1 to 0.5.2 (#513) @dependabot
- [DEPENDABOT]: Bump pyhpo from 3.1.4 to 3.1.5 (#514) @dependabot
- [DEPENDABOT]: Bump pandas from 1.5.3 to 2.0.0 (#490) @dependabot
- [DEPENDABOT]: Bump types-requests from 2.28.11.17 to 2.29.0.0 (#509) @dependabot
- [DEPENDABOT]: Bump pre-commit from 3.2.2 to 3.3.0 (#508) @dependabot
- [DEPENDABOT]: Bump pytest from 7.3.0 to 7.3.1 (#507) @dependabot
- [DEPENDABOT]: Bump sphinx-autodoc-typehints from 1.22 to 1.23.0 (#506) @dependabot
- [DEPENDABOT]: Bump codecov/codecov-action from 3.1.2 to 3.1.3 (#505) @dependabot
- [DEPENDABOT]: Bump anndata from 0.9.0 to 0.9.1 (#501) @dependabot
- [DEPENDABOT]: Bump sphinx-design from 0.3.0 to 0.4.1 (#500) @dependabot
- [DEPENDABOT]: Bump codecov/codecov-action from 3.1.1 to 3.1.2 (#499) @dependabot
- [DEPENDABOT]: Bump cvxopt from 1.3.0 to 1.3.0.1 (#497) @dependabot
- [DEPENDABOT]: Bump pytest from 7.2.2 to 7.3.0 (#496) @dependabot
- [DEPENDABOT]: Bump scikit-learn-intelex from 2023.0.2 to 2023.1.0 (#491) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.3 to 1.8.5 (#489) @dependabot
- [DEPENDABOT]: Bump pre-commit from 3.2.1 to 3.2.2 (#492) @dependabot
- [DEPENDABOT]: Bump furo from 2023.3.23 to 2023.3.27 (#488) @dependabot
- [DEPENDABOT]: Bump rich from 13.3.2 to 13.3.3 (#487) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.1 to 1.8.3 (#485) @dependabot
- [DEPENDABOT]: Bump pre-commit from 3.2.0 to 3.2.1 (#486) @dependabot
- [DEPENDABOT]: Bump sphinx-automodapi from 0.14.1 to 0.15.0 (#478) @dependabot
- [DEPENDABOT]: Bump flake8-bugbear from 23.2.13 to 23.3.12 (#479) @dependabot
- [DEPENDABOT]: Bump fhiry from 2.1.0 to 3.0.0 (#480) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.7.1 to 1.8.1 (#483) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.7.1 (#477) @dependabot
- [DEPENDABOT]: Bump sphinxcontrib-spelling from 7.7.0 to 8.0.0 (#470) @dependabot
- [DEPENDABOT]: Bump pytest from 7.2.1 to 7.2.2 (#471) @dependabot
- [DEPENDABOT]: Bump myst-parser from 0.18.1 to 0.19.1 (#472) @dependabot
- [DEPENDABOT]: Bump missingno from 0.5.1 to 0.5.2 (#468) @dependabot
- [DEPENDABOT]: Bump coverage from 7.2.0 to 7.2.1 (#466) @dependabot
- [DEPENDABOT]: Bump types-requests from 2.28.11.11 to 2.28.11.13 (#461) @dependabot
- [DEPENDABOT]: Bump deep-translator from 1.10.0 to 1.10.1 (#459) @dependabot
- [DEPENDABOT]: Bump scanpy from 1.9.1 to 1.9.2 (#460) @dependabot
- [DEPENDABOT]: Bump flake8-bugbear from 23.1.20 to 23.2.13 (#455) @dependabot
- [DEPENDABOT]: Bump ipython from 8.9.0 to 8.10.0 (#456) @dependabot
- [DEPENDABOT]: Bump sphinxext-opengraph from 0.8.0 to 0.8.1 (#457) @dependabot
- [DEPENDABOT]: Bump deep-translator from 1.9.3 to 1.10.0 (#451) @dependabot
- [DEPENDABOT]: Bump types-requests from 2.28.11.8 to 2.28.11.9 (#453) @dependabot
- [DEPENDABOT]: Bump mypy from 0.991 to 1.0.0 (#452) @dependabot
- [DEPENDABOT]: Bump pre-commit from 3.0.1 to 3.0.2 (#450) @dependabot
- [DEPENDABOT]: Bump sphinx-autodoc-typehints from 1.21.8 to 1.22 (#449) @dependabot
- [DEPENDABOT]: Bump safety from 2.3.4 to 2.3.5 (#448) @dependabot
- [DEPENDABOT]: Bump scikit-learn-intelex from 2023.0.1 to 2023.0.2 (#445) @dependabot
- [DEPENDABOT]: Bump nbsphinx from 0.8.11 to 0.8.12 (#444) @dependabot
- [DEPENDABOT]: Bump rich from 13.1.0 to 13.2.0 (#443) @dependabot
- [DEPENDABOT]: Bump pytest from 7.2.0 to 7.2.1 (#442) @dependabot
- [DEPENDABOT]: Bump rich from 13.0.1 to 13.1.0 (#441) @dependabot
- [DEPENDABOT]: Bump deep-translator from 1.9.1 to 1.9.2 (#440) @dependabot
- [DEPENDABOT]: Bump medcat from 1.5.0 to 1.6.0 (#439) @dependabot
- [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.6.1 to 1.6.4 (#432) @dependabot