cytorete 0.1.1

cytorete v0.1.1 — two lookups that failed on every cytome

on Python PyPI

A patch release. Nothing about the method changed; two functions that could
not work on a .cytome file now do.

Fixed

• cytorete.pl.regulonEmbedding raised Embedding not found: X_umap on
  every cytome. Conversion stores obsm arrays under a modality prefix —
  RNA_umap since cytome 0.2.6, RNA_obsm_X_umap before it — and the lookup
  was exact, so the function failed regardless of how the file was written.
  It now resolves the short name the way plotting's basis= does, matching
  both naming generations; an unknown key lists what the file actually has.

• cytorete.pl.regulonNetwork drew unlabelled targets. The TF was named
  and every target was an anonymous dot, which conveys only that the TF has
  targets — something the target count already said. Target names are drawn
  by default; pass label_targets=False for dense multi-TF layouts.

Added

• inferRegulon accepts a .cytome path as well as an open dataset,
  matching the rest of the stack, and closes what it opened. Previously a
  path raised AttributeError: 'str' object has no attribute 'var_names'
  three frames down, naming nothing the caller had done wrong.

Upgrading

pip install -U cytorete

No API changes. Code written against 0.1.0 keeps working; the two functions
above start working on inputs where they previously raised.

Suite: 60 passed in the published distribution, against released
piaso-tools / cosg / cytome.