Changelog
Additions
- Add Python 3.10 build
- Add
writer_iter()
to someFile
classes- Allows entry-wise writing into a file to reduce memory consumption, as
there is no longer the need to keep the entire file content in memory - Implemented for
sequence.io.FastaFile
,sequence.io.FastqFile
and all
classes inheriting fromstructure.io.TrajectoryFile
- Allows entry-wise writing into a file to reduce memory consumption, as
- Add
symbol_spacing
parameter tosequence.graphics.plot_alignment
- If the parameter is given, a small gap is introduced every n
symbols in the alignment - Also added to
sequence.graphics.plot_alignment_similarity_based
and
sequence.graphics.plot_alignment_types_based
- If the parameter is given, a small gap is introduced every n
Changes
- Python 3.7 builds are discontinued
Fixes
- Now the simulation time for each frame is returned in
structure.io.NetCDFFile
, previously it was alwaysNone