Changelog

Additions

• Added structure.from_template() to create a structure.AtomArrayStack from an existing atom array (or stack) and coordinates
• Added ignore parameter to sequence.io.genbank.get_annotation() to ignore the given feature keys
• Added sequence.graphics.plot_plasmid_map() for visualizing sequence.Annotation objects as plasmid
• Added a bunch of new examples to the gallery
• Added support for Python 3.8 on Windows

Changes

• The output of the score_matrix() method of sequence.align.SubstitutionMatrix is not writable anymore, rendering a SubstitutionMatrix truly immutable
• Renamed environment.yaml to environment.yml
• A sequence.Feature must have at least one location

Fixes

• Fixed incorrect centroid calculation in structure.superimpose(), when providing a boolean mask
• Fixed installation of PyPI source distributions
• Fixed issues when reading text files with \r\n line breaks (line breaks with carriage return, typical for Windows)