This version includes upgrades and updates to a variety of methods.
A major new feature in this release is automated builds of docker images for
both pyAFQ by itself, as well as in tandem with qsiprep.
- [FIX] Minor BF for nightly tests (#665)
- [ENH] A variety of registration improvements, primarily for babyAFQ (#661)
- [Doc] try new docs layout (#664)
- [FIX] Build and push pyAFQ docker image only after merge (#663)
- [ENH] docker workflow for pyafq and afqsi (#659)
- only run roi dilation if necessary (#662)
- BF: Set up bundle dict in cases where a dict is provided, but algo is "reco" (#658)
- [FIX] try to make pyafq play nice with pybids 0.9.3 (#660)
- BF: _gen_sl_counts function was failing with more than one subject (#656)
- [FIX] remove invalid sls from tractography, which could be custom (#654)
- [FIX] Propogate flip axial to export_all (#651)
- [ENH] make cvxpy optional (#653)
- Allow ItkMap in pyAFQ (#650)
- Dipy should be at least 1.4.0 (#643)
- Median tract profile (#649)
- Some minor bug fixes/improvements from the optic bids PR (#647)
- Major changes for processing optic radiations with CLI (#625)
- [ENH] Input ylim for CI plots (#642)
- [FIX] Plotly Bundle Visualization fixes (#641)
- DOC: This page has since moved. (#640)
- DOC: When releasing, we need to push the tag upstream. (#639)
- Add API method to export masked b0 (#638)
- [FIX] opacity argument to make fury API like plotly API (#637)
- Add conflict checker; loosen up dependencies (#636)
- Allow more flexibility in dask version (#634)
- More plotting tweaks, gridspec compat (#627)
- Added an ROI pre segmentation as an option for recobundles (#573)
- Relax versions to avoid cvxpy/numpy incompatibility (#632)
- export endpoint ROI when saving intermediates (#628)
- FIX: combine AFQ profiles (#585)
- Fixes DCP Error (#630)
- Update numpy version (#629)
- Allow user to only use prealign in registration (#626)