github stan-dev/stan v2.7.0

latest releases: v2.35.0, v2.35.0-rc2, v2.35.0-rc1...
9 years ago

v2.7.0 (9 July 2015)

New Team Members

  • Alp Kucukelbir, who brings you variational inference
  • Robert L. Grant, who brings you the StataStan interface

Major New Feature

  • Black-box variational inference, mean field and full
    rank (#1505)

New Features

  • Line numbers reported for runtime errors (#1195)
  • Wiener first passage time density (#765) (thanks to
    Michael Schvartsman)
  • Partial initialization (#1069)
  • NegBinomial2 RNG (#1471) and PoissonLog RNG (#1458) and extended
    range for Dirichlet RNG (#1474) and fixed Poisson RNG for older
    Mac compilers (#1472)
  • Error messages now use operator notation (#1401)
  • More specific error messages for illegal assignments (#1100)
  • More specific error messages for illegal sampling statement
    signatures (#1425)
  • Extended range on ibeta derivatives with wide impact on CDFs (#1426)
  • Display initialization error messages (#1403)
  • Works with Intel compilers and GCC 4.4 (#1506, #1514, #1519)

Bug Fixes

  • Allow functions ending in _lp to call functions ending in _lp (#1500)
  • Update warnings to catch uses of illegal sampling functions like
    CDFs and updated declared signatures (#1152)
  • Disallow constraints on local variables (#1295)
  • Allow min() and max() in variable declaration bounds and remove
    unnecessary use of math.h and top-level :: namespace (#1436)
  • Updated exponential lower bound check (#1179)
  • Extended sum to work with zero size arrays (#1443)
  • Positive definiteness checks fixed (were > 1e-8, now > 0) (#1386)

Code Reorganization and Back End Upgrades

  • New static constants (#469, #765)
  • Added major/minor/patch versions as properties (#1383)
  • Pulled all math-like functionality into stan::math namespace
  • Pulled the Stan Math Library out into its own repository (#1520)
  • Included in Stan C++ repository as submodule
  • Removed final usage of std::cout and std::cerr (#699) and
    updated tests for null streams (#1239)
  • Removed over 1000 CppLint warnings
  • Remove model write CSV methods (#445)
  • Reduced generality of operators in fvar (#1198)
  • Removed folder-level includes due to order issues (part of Math
    reorg) and include math.hpp include (#1438)
  • Updated to Boost 1.58 (#1457)
  • Travis continuous integration for Linux (#607)
  • Add grad() method to math::var for autodiff to encapsulate math::vari
  • Added finite diff functionals for testing (#1271)
  • More configurable distribution unit tests (#1268)
  • Clean up directory-level includes (#1511)
  • Removed all lint from new math lib and add cpplint to build lib
    (#1412)
  • Split out derivative functionals (#1389)

Manual and Documentation

  • New Logo in Manual; remove old logos (#1023)
  • Corrected all known bug reports and typos; details in
    issues #1420, #1508, #1496
  • Thanks to Sunil Nandihalli, Andy Choi, Sebastian Weber,
    Heraa Hu, @jonathan-g (GitHub handle), M. B. Joseph, Damjan
    Vukcevic, @tosh1ki (GitHub handle), Juan S. Casallas
  • Fix some parsing issues for index (#1498)
  • Added chapter on variational inference
  • Added strangely unrelated regressions and multivariate probit
    examples
  • Discussion from Ben Goodrich about reject() and sampling
  • Start to reorganize code with fast examples first, then
    explanations
  • Added CONTRIBUTING.md file (#1408)

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