- Added glycan visualisations both full structures and fragments, in the spectrum, on peptides, and when searching / displaying modifications
- Custom models can be saved (and backed up and shared between machines)
- Added support for a basic CSV file to open as identified peptide (needing 'scan_index', 'z', 'raw_file', 'sequence', and possibly 'mode' as columns)
- Added support for more complex fragmentation model
- Added amino acid specific neutral losses to peptide fragments
- Added side chain losses from peptide fragments
- Added variant ions, where ions lose or gain hydrogen, z· means z + H, z' means z - H
- Added control over glycan fragments on peptide fragments
- Added control to neutral losses of glycan diagnostic ions and immonium ions
- Added satellite ions distant from the parent breakage, nw indicates a w ion where the nth side chain (starting at 0) from the parent z ion fragments off
- MS2 annotations are ordered on crude likelihood
- General bug fixes, amongst others fixed high memory usage on merging spectra
- Added the manual in the Annotator to make it easy to find
See the assets to download the installers.