samtools/samtools 1.15.1

on GitHub

Download the source code here: samtools-1.15.1.tar.bz2.(The "Source code" downloads are generated by GitHub and are incomplete as they don't bundle HTSlib and are missing some generated files.)

Bug fixes:

• A bug which prevented the samtools view --region-file (and the equivalent -M -L <file>) options from working in version 1.15 has been fixed. (#1617)

• Fixed a crash triggered by using the samtools view -c/--count and --unmap options together. The --unmap option is now ignored in counting mode. (#1619)

Documentation:

• The consensus command was missing from the main samtools.1 manual page. It has now been added. (#1603)

• Corrected instructions for reproducing the samtools stats "raw total sequences" count using samtools view -c. (#1620; reported by krukanna)

• Improved manual page formatting. (#1625; thanks to John Marshall)

Non user-visible changes and build improvements:

• Unnecessary #include lines have been removed from bam_plcmd.c. (#1607; thanks to John Marshall)