• Added CHR/POS columns to snplist output file when using --write-mask-snplist to make it tabixable
• Genotype counts are now reported in the sumstats file when using --no-split (note these are based on all of the analyzed samples)
  • The added columns names are N_RR|N_RA|N_AA for homRef/het/homALT genotypes, respectively.
• Improved efficiency of LOOCV scheme in ridge level 0
• Detect carriage return in fam/psam/bim/pvar/sample files
• Bug fix for BURDEN-ACAT test when only a single mask is in the GENE_P group
• Address convergence failures when applying Firth correction to single variants in gene-based tests