- Add new columns in sumstats file (N_CASES/N_CONTROLS) to output the number of cases/controls when using
--af-cc(#348) - Bug fix for LOVO with ultra-rare variants in SKAT/ACAT tests
- Bug fix for SKATO with negative variance (#342)
- Bug fix when chisq test statistic is numerically <0
- Bug fix to allow to skip association testing (
--skip-test) when only writing out the list of variants in each mask (--write-mask-snplist) - Bug fix to correctly catch phenotype failing either null logistic regression or null logistic Firth in step 2 and write the phenotype names to file
- Reduce convergence issues with logistic regression null model