• Bug fix for SKAT/SKATO when testing on binary traits using Firth/SPA (introduced in v3.1.1)
• Switched name of NNLS joint test to SBAT altering the name of corresponding options:
  • --joint sbat instead of --joint nnls
• Bonferroni correction is now applied before reporting the SBAT test p-value [to correct for taking minP of 2 tests]
• Added warning for heterozygous males in chrX non-PAR regions (males should be coded as diploid [0/2] for chrX) - hard-call mode only