We haven't sit still since the release of our 2.0 stable and one of the most pressing issues was that Windows support was broken. Because fixing that cannot wait until 2.1 is released to have created version 2.0.1 which addresses these issues.
FIXED: Generated phar files could not be set to executable and ran. FIXED: Missing File-level DocBlocks were not detected. FIXED: Classes and namespace were not generated in Windows. FIXED: Notices were thrown with the Clean template. FIXED: In windows were paths calculated incorrectly.