This release of ROBOT includes the new report
command and a number of other improvements.
report
runs a series of quality control checks (SPARQL queries) over the input ontology and generates a TSV or YAML report file based on the results. We will add and revise these checks with input from the OBO community. See http://robot.obolibrary.org/report.
Other changes:
--collapse-import-closure
option formerge
: Whentrue
(the default) all imports will be merged and allowl:import
statements will be removed. Possible breaking change: In previous versions of ROBOT,owl:import
statements were not removed. #275- improved error messages, linking to ROBOT website #246
- global
--catalog FILE
option #274 --check
option forconvert
allows conversion of more OBO-format files--include-annotations
option formerge
allows better control of ontology annotations #277--copy-ontology-annotations
option forextract
, #319--dump-unsatisfiable
option forreason
, #174