0.13.1 (May 20, 2017)
- FIX: Make release compatible with conda-forge build process (#2017)
- ENH: Update some minimum versions in compliance with Debian Jessie (#2017)
- ENH: Circle builds use cached docker layers (#2017)
- ENH: Base docker to use FS6 and ANTS 2.2.0 (#2024)
- FIX: Mailmap and contributor acknowledgment (#2017)
- FIX: Preserve node properties in sub nodes of MapNode (#2019)
- FIX: Fix interfaces 3DUnifize, ICA_AROMA, BinaryMaths, RegAverage, BBRegister,
AffineInitializer (#2025, #2027,
#2036, #2037,
#2031, #2010) - ENH: Add Anisotropic Power interface (#2039)
- FIX: Bayesian estimation in SPM (#2030)
0.13.0 (May 11, 2017)
- ENH: Multi-stage recon-all directives (#1991)
- FIX: FEAT "folder does not exist" error (#2000)
- ENH: Niftyfit interfaces (#1910)
- FIX: Define ANTSPATH for BrainExtraction automatically (#1986)
- ENH: New trait for imaging files (#1949)
- ENH: Niftyseg interfaces (#1911)
- ENH: Niftyreg interfaces (#1913)
- MRG: Allow more support for CLI (#1908)
- ENH: 3dQwarpPlusMinus interface (#1974)
- FIX: PY3.6 support (#1977)
- FIX: PY3 and stream fixes for MRTrix2TrackVis (#1804)
- ENH: More mask options for CompCor interfaces (#1968 + #1992)
- ENH: Additional TOPUP outputs (#1976)
- ENH: Additional Eddy flags (#1967)
- ENH: ReconAll handlers for less common cases (#1966)
- ENH: FreeSurferSource now finds graymid/midthickness surfs (#1972)
- ENH: Additional fslmaths dimensional reduction operations (#1956)
- ENH: More options for RobustFOV interface (#1923)
- ENH: Add MRIsCombine to FreeSurfer utils (#1948)
- FIX: Level1Design EV parameter substitution (#1953)
- FIX: Dcm2niix outputs can be uncompressed (#1951)
- FIX: Ensure build fails in Circle when tests fail (#1981)
- ENH: Add interface to antsAffineInitializer (#1980)
- ENH: AFNI motion parameter support for FrameWiseDisplacement (#1840)
- ENH: Add ANTs KellyKapowski interface (#1845)
- FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (#1728)
- FIX: Select Eddy run command at runtime (#1871)
- FIX: Increase FLIRT's flexibility with apply_xfm (#1875)
- DOC: Update FSL preprocess docstrings (#1881)
- ENH: Support GIFTI outputs in SampleToSurface (#1886)
- FIX: Configparser differences between PY2 and PY3 (#1890)
- ENH: Add mris_expand interface (#1893)
- FIX: Split over-eager globs in FreeSurferSource (#1894)
- FIX: Store undefined by default so that xor checks don't trip (#1903)
- FIX: Gantt chart generator PY3 compatibility (#1907)
- FIX: Add DOF and --fsl-dof options to BBRegister (#1917)
- ENH: Auto-derive input_names in Function (#1918)
- FIX: Minor fixes for NonSteadyStateDetector (#1926)
- DOC: Add duecredit references for AFNI and FSL (#1930)
- ENH: Added zenodo (https://zenodo.org/) file (#1924)
- ENH: Disable symlinks on CIFS filesystems (#1941)
- ENH: Sphinx extension to plot workflows (#1896)
- ENH: Added non-steady state detector for EPI data (#1839)
- ENH: Enable new BBRegister init options for FSv6+ (#1811)
- REF: Splits nipype.interfaces.utility into base, csv, and wrappers (#1828)
- FIX: Makespec now runs with nipype in current directory (#1813)
- FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (#1796 + #1831)
- ENH: DVARS includes intensity normalization feature - turned on by default (#1827)
- FIX: DVARS is correctly using sum of squares instead of standard deviation (#1827)
- ENH: Refactoring of nipype.interfaces.utility (#1828)
- FIX: CircleCI were failing silently. Some fixes to tests (#1833)
- FIX: Issues in Docker image permissions, and docker documentation (#1825)
- ENH: Revised all Dockerfiles and automated deployment to Docker Hub
from CircleCI (#1815) - ENH: Update ReconAll interface for FreeSurfer v6.0.0 (#1790)
- FIX: Cast DVARS float outputs to avoid memmap error (#1777)
- FIX: FSL FNIRT intensity mapping files (#1799)
- ENH: Additional outputs generated by FSL EDDY (#1793)
- TST: Parallelize CircleCI build across 4 containers (#1769)
0.13.0-rc1 (January 4, 2017)
- FIX: Compatibility with traits 4.6 (#1770)
- FIX: Multiproc deadlock (#1756)
- TST: Replace nose and unittest with pytest (#1722, #1751)
- FIX: Semaphore capture using MultiProc plugin (#1689)
- REF: Refactor AFNI interfaces (#1678, #1680)
- ENH: Move nipype commands to group command using click (#1608)
- FIX: AFNI Retroicor interface fixes (#1669)
- FIX: Minor errors after migration to setuptools (#1671)
- ENH: Add AFNI 3dNote interface (#1637)
- ENH: Abandon distutils, only use setuptools (#1627)
- FIX: Minor bugfixes related to unicode literals (#1656)
- TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files)
- ENH: Add signal extraction interface (#1647)
- ENH: Add a DVARS calculation interface (#1606)
- ENH: New interface to b0calc of FSL-POSSUM (#1399)
- ENH: Add CompCor (#1599)
- ENH: Add duecredit entries (#1466)
- FIX: Python 3 compatibility fixes (#1572)
- REF: Improved PEP8 compliance for fsl interfaces (#1597)
- REF: Improved PEP8 compliance for spm interfaces (#1593)
- TST: Replaced coveralls with codecov (#1609)
- ENH: More BrainSuite interfaces (#1554)
- ENH: Convenient load/save of interface inputs (#1591)
- ENH: Add a Framewise Displacement calculation interface (#1604)
- FIX: Use builtins open and unicode literals for py3 compatibility (#1572)
- TST: reduce the size of docker images & use tags for images (#1564)
- ENH: Implement missing inputs/outputs in FSL AvScale (#1563)
- FIX: Fix symlink test in copyfile (#1570, #1586)
- ENH: Added support for custom job submission check in SLURM (#1582)
- ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant
(#1654)