Release Notes
Bug-fix release in the 21.0.x series.
This release re-enables reverse-PE EPI fieldmaps, i.e. EPIs acquired with the opposite phase-encoding direction to a BOLD series.
Additionally, the --use-syn-sdc option will now error by default if no PhaseEncodingDirection can be found for a BOLD series. To reduce this to a warning, use --use-syn-sdc warn. SyN-SDC will NOT be run, but the workflow will proceed.
NOTE:
topupruntime scales with the number of volumes used, so fMRIPrep defaults to using a maximum of 5 volumes from each of the BOLD series and the EPI fieldmap. To adjust this, please use the--topup-max-volsparameter.
Changes
- FIX: Create single fmap_select_std node for use with all ANAT estimators (#2692)
- FIX: Re-enable reverse-PE EPI fieldmaps (#2684)
- FIX: Pass boolean use_syn_sdc to find_estimators (#2685)
- FIX: Ensure AROMA inputs are uncompressed if --low-mem (#2657)
- ENH: Add
--topup-max-volsflag to control TOPUP runtime (#2688) - ENH: Allow
--use-syn-sdcto take a "warn" option to avoid exiting when PE dir is unavailable (#2680) - RF: Add extension field to differentiate from upcoming templates (#2613)
- WRAPPER: Map
--bids-filter-file\s into Docker container (#2691) - MNT: Silence warning from pybids; list packaging as dependency (#2689)
- MNT: Add netbase to Docker image to ensure correct datalad operation (#2682)
- MNT: Restore nitime to requirements, necessary for DVARS (#2678)