nipreps/fmriprep 21.0.0rc0

fMRIPrep 21.0.0rc0

on GitHub

Release Notes

The first release candidate of a new major version of fMRIPrep is here!
This release includes multiple enhancements, as well as a few bug-fixes, and features a comprehensive overhaul of susceptibility distortion correction (SDC).

Changes

• DOC: Update sample report (#2519)
• DOC: Refactor README and citing information (#2474)
• DOC: Point documentation at SDCFlows and remove SDC section (#2470)\
• DOC: Transfer duplicated documentation to www.nipreps.org (#2469)
• DOC: Better explanation on how spike regressors are generated (#2465)
• DOC: Clarify that res-2 entity does not mean 2mm (#2466)
• DOC: adds --mem metavar (#2378)
• DOC: skull stripping is forced by default (#2345)
• ENH: Add flag for STC reference time and set in all cases (#2520)
• ENH: Use BIDSLayoutIndexer and do not index unnecessary modalities (#2494)
• ENH: Allow users to download templateflow templates to directory (#2482)
• ENH: Detect 3D & too-short BOLD series, warn and skip run's workflow building (#2461)
• ENH: Modernize Dockerfile (#2409) (#2270)
• ENH: Leverage SDCFlows 2.x API (#2392)
• FIX: Avoid eager imports from NiWorkflows causing API breaks (#2495)
• FIX: Split aCompCor into aCompCor, cCompCor, wCompCor (#2523)
• FIX: Avoid unnecessary connections based on branching logic (#2508)
• FIX: Permit missing TR to show PyBIDS error at workflow construction time (#2513)
• FIX: Simplify STC logic for too short BOLD series (#2489)
• FIX: Catch FreeSurfer error related to FIPS being enabled (#2490)
• FIX: DerivativesDataSink nondeterministic checksums fixed with niworkflows=~1.3.4 (#2458)
• FIX: Address dependency incompatibilities by pinning specific packages (#2463)
• FIX: Unprotected import of sentry_sdk, which is not a dependency (#2460)
• FIX: Clarify phase encoding direction, rather than axis (#2302)
• MAINT: Relicense +20.3.x - BSD-3-Clause -> Apache License 2.0 (#2325)
• MAINT: Add missing OASIS30 WM/BS probsegs (#2471)
• MAINT: Update BIDS validator to 1.8.0 (#2443)
• MAINT: Address the problems of a sloppy merge (#2468)
• MAINT: Containers - remove /root/.npm (#2464)
• MAINT: Remove traces of Xenial base (#2459)
• MAINT: Revise CircleCI's cache tags to avoid mixups between builds (#2457)
• MAINT: Back port CircleCI configuration from dev branch (#2456)
• MAINT: Increase minimum tedana version (#2366)
• MAINT: Docker hub has disabled password authentication (#2448)
• MAINT: Add Lea Waller to contributors.json (#2304)
• MAINT: Move away from nearly deprecated images (#2295)
• MAINT: Migrate from poldracklab to nipreps orgs (#2290)
• MAINT: Ease CI packaging tests (#2472)