nipreps/fmriprep 20.2.0

20.2.0 (Long-Term Support)

on GitHub

Release Notes

With this third minor release series of 2020, the first fMRIPrep LTS (long-term support) is finally here!

This release contains a number of bug-fixes and enhancements mostly related to easing the maintenance, anticipating patch-release breaking changes to ensure a longstanding LTS, and addressing some run-to-run repeatability problems of the CompCor implementation.

fMRIPrep 20.2 LTS introduces the long-term support program. This LTS version will be kindly steered and maintained by the group of Dr. Basile Pinsard and Prof. Pierre Bellec at CRIUGM, (Université de Montréal). The LTS is planned for a window of 4 years of support (i.e., until September 2024).

As with all minor version increments, working directories from previous versions should not be reused.

Thank you for using fMRIPrep! If you encounter any issues with this release, please let us know by posting an issue on our GitHub page!

CHANGES

• FIX: Pin NiWorkflows 1.3.1 and sMRIPrep 0.7.0rc2, including bugfix for INU-correction failures (nipreps/niworkflows#567)
• FIX: Get missing probseg file from MNI152NLin2009cAsym (#2271)
• FIX: Restore --ignore t2w/flair options (#2260)
• FIX: Revise the reproducibility of CompCor masks (#2130)
• FIX: Simplify transform aggregation in resampling, pass identity transforms for multi-echo cases (#2239)
• FIX: Skip the T1w check if --anat-derivatives is provided. (#2201)
• FIX: Storing --bids-filters within config file (#2177)
• FIX: Revise multi-echo reference generation, permitting using SBRefs too (#1803)
• FIX: FreeSurfer license manipulation & canary
• ENH: Output CompCor masks if --debug compcor is passed (#2248)
• ENH: Conform to BIDS Derivatives as of BIDS 1.4.0 (#2223)
• ENH: Reuse config (#2240)
• ENH: Save BOLD-anatomical transforms to derivatives folder (#2233)
• ENH: Leverage BIDSLayout's database_path (#2203)
• ENH: Add --no-tty option to fmriprep-docker.py (#2204)
• ENH: Report number of echoes in BOLD summary. (#2184)
• ENH: Ensure NiPype telemetry is just pinged once (#2168)
• DOC: Add FAQ entry for using pre-indexed layouts (#2256)
• DOC: Update reference in "Refinement of Brain Mask" description (#2215)
• DOC: List TemplateFlow templates that need to be prefetched (#2196)
• DOC: Update references to https://github.com/nipreps (#2191)
• DOC: Pin NiPype with new Sphinx extension syntax (#2092)
• MAINT: Upgrade ANTs to 2.3.3 in Dockerfile (9512086)
• MAINT: Track #2269 and #2269, bug-fixes on the 20.1.x series
• MAINT: Remove derivatives from layout index ignores (#2258)
• MAINT: Track #2252 from 20.1.x series (#2253)
• MAINT: Silence PyBIDS warning by setting extension mode (#2250)
• MAINT: Drop CircleCI docs build (#2247)
• MAINT: Pin latest NiPreps (#2244)
• MAINT: Update setup.cfg (flake8 and pytest) (#2183)
• MAINT: Delete release-drafter (#2169)
• MAINT: Track bug-fix release on the 20.1.x series (#2165)
• MAINT: Remove auto-comment bot (#2166)
• MAINT: Improve the questions on the bug-report template (#2158)