What's Changed
- Bump after release 3.21.0 by @pinin4fjords in #1608
- Important! Template update for nf-core/tools v3.4.1 by @nf-core-bot in #1614
- Bbsplit staging issue by @EladH1 in #1617
- Optimize qualimap performance with multi-threaded name sorting by @pinin4fjords in #1621
- Fix bigwig strand labeling for reverse-stranded libraries by @pinin4fjords in #1620
- Fix CI: Ensure confirm-pass job runs for markdown-only PRs by @pinin4fjords in #1618
- usage - fix broken link and add latest kit version for Takara UMI prep by @pontushojer in #1613
- Update tximeta/tximport module to fix sample name mangling by @pinin4fjords in #1623
- Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot in #1628
- Document Qualimap read counting limitation by @pinin4fjords in #1625
- Document RSeQC inner_distance limitation for large chromosomes by @pinin4fjords in #1624
- Update Credits to reflect current maintainership by @pinin4fjords in #1619
- Fix bbsplit index staging by using symlinks by @pinin4fjords in #1631
- Fix arm64 profile configuration by @pinin4fjords in #1630
- Add validation error for incompatible transcript_fasta and additional_fasta params by @Copilot in #1633
- Add validation error for incompatible transcript_fasta and additional_fasta params by @Copilot in #1634
- Fix
--gtf_extra_attributesto support multiple comma-separated values by @pinin4fjords in #1635 - Simplify workflow nextflow.config by consolidating redundant patterns by @pinin4fjords in #1636
- Add validation error for incompatible transcript_fasta and additional_fasta params by @pinin4fjords in #1632
- Bump version to 3.22.0 ahead of release by @pinin4fjords in #1638
- Dev -> master for nf-core/rnaseq 3.22.0 by @pinin4fjords in #1639
New Contributors
- @EladH1 made their first contribution in #1617
- @pontushojer made their first contribution in #1613
- @Copilot made their first contribution in #1633
Full Changelog: 3.21.0...3.22.0