[3.12.0] - 2023-06-02
Credits
Special thanks to the following for their contributions to the release:
Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
Enhancements & fixes
- [#1011] - FastQ files from UMI-tools not being passed to fastp
- [#1018] - Ability to skip both alignment and pseudo-alignment to only run pre-processing QC steps.
- PR #1016 - Updated pipeline template to nf-core/tools 2.8
- PR #1025 - Add
public_aws_ecr.configto source mulled containers when usingpublic.ecr.awsDocker Biocontainer registry - PR #1038 - Updated error log for count values when supplying
--additional_fasta - PR #1042 - revert samtools_sort modules to no memory assignement
Parameters
| Old parameter | New parameter |
|---|---|
--skip_pseudo_alignment
|
NB: Parameter has been updated if both old and new parameter information is present.
NB: Parameter has been added if just the new parameter information is present.
NB: Parameter has been removed if new parameter information isn't present.
Software dependencies
| Dependency | Old version | New version |
|---|---|---|
fastp
| 0.23.2 | 0.23.4 |
samtools
| 1.16.1 | 1.17 |
NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if new version information isn't present.