nf-core/rnaseq 1.3

nf-core/rnaseq version 1.3

on GitHub

Pipeline Updates

• Added configurable options to specify group attributes for featureCounts #144
• Added support for RSeqC 3.0 #148
• Added a parameters.settings.json file for use with the new nf-core launch helper tool.
• Centralized all configuration profiles using nf-core/configs
• Fixed all centralized configs for offline usage
• Hide %dup in multiqc report

Bug fixes

• Fixing HISAT2 Index Building for large reference genomes #153
• Fixing HISAT2 BAM sorting using more memory than available on the system
• Fixing MarkDuplicates memory consumption issues following #179

Dependency Updates

• RSeQC 2.6.4 -> 3.0.0
• Picard 2.18.15 -> 2.18.23
• r-data.table 1.11.4 -> 1.12.0
• r-markdown 0.8 -> 0.9
• csvtk 0.15.0 -> 0.17.0
• stringtie 1.3.4 -> 1.3.5
• subread 1.6.2 -> 1.6.4
• gffread 0.9.9 -> 0.9.12
• multiqc 1.6 -> 1.7