nf-core/rnaseq 1.2

nf-core/rnaseq version 1.2

on GitHub

Pipeline updates

• Removed some outdated documentation about non-existent features
• Config refactoring and code cleaning
• Added a --fcExtraAttributes option to specify more than ENSEMBL gene names in featureCounts
• Remove legacy rseqc strandRule config code. #119
• Added STRINGTIE ballgown output to results folder #125
• HiSAT index build now requests 200GB memory, enough to use the exons / splice junction option for building.
  • Added documentation about the --hisatBuildMemory option.
• BAM indices are stored and re-used between processes #71

Bug Fixes

• Fixed conda bug which caused problems with environment resolution due to changes in bioconda #113
• Fixed wrong gffread command line #117
• Added cpus = 1 to workflow summary process #130