nf-core/rnaseq 1.1

nf-core/rnaseq version 1.1

on GitHub

Pipeline updates

• Wrote docs and made minor tweaks to the --skip_qc and associated options
• Removed the depreciated uppmax-modules config profile
• Updated the hebbe config profile to use the new withName syntax too
• Use new workflow.manifest variables in the pipeline script
• Updated minimum nextflow version to 0.32.0

Software updates

• FastQC 0.11.7 > 0.11.8
• STAR 2.6.1a > 2.6.1b
• Picard 2.18.11 > 2.18.14
• Deeptools 3.1.1 > 3.1.4

Bug Fixes

• #77: Added back executor = 'local' for the workflow_summary_mqc
• #95: Check if task.memory is false instead of null
• #97: Resolved edge-case where numeric sample IDs are parsed as numbers causing some samples to be incorrectly overwritten.