This release contains changes for datasets:
- Enterovirus D68 (enpen/enterovirus/ev-d68)
- Yellow fever virus (YFV) complete genome (community/pathoplexus/yellow-fever-virus)
Enterovirus D68 (enpen/enterovirus/ev-d68)
- Ancestral sequence is now root of the tree and taken as the alignment reference
- The ordering in Nextclade Web results of the references has changed to display Fermon first for mutation calling
- The
pre-ABCclade is now assigned based on a deletion in the 5'UTR - New sequences in A2/D clade (released in April) were added
- The sequences are now subsampled by country & year
- The seed-match threshold was increased from 0.4 to 0.75 so that other EVs don't align
- The accession numbers in the tree now have a URL to GenBank
Yellow fever virus (YFV) complete genome (community/pathoplexus/yellow-fever-virus)
Initial release