github nextstrain/nextclade_data 2026-07-29--15-14-17Z

7 hours ago

This release contains changes for datasets:

  • Coxsackievirus A16 (enpen/enterovirus/cva16)

Coxsackievirus A16 (enpen/enterovirus/cva16)

The dataset was manually curated to remove recombinant, frameshifted, and other low-quality sequences, including several recombinants from Xu et al. (2025). Single recombinants were excluded, but recurring circulating recombinant forms (e.g. a 5'UTR recombinant) were kept to preserve tree diversity. Some sequences with apparent frameshifts were also kept, since they show normal evolution and tree topology.

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