github nextstrain/nextclade_data 2026-04-21--09-39-50Z
on GitHub

3 hours ago

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add all 202 Pango lineages newly designated between 2025-12-24 and 2026-04-15. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • RG.2 (2026-01-06)
  • RG.3 (2026-01-06)
  • XFG.3.3.2 (2026-01-06)
  • XFG.3.3.3 (2026-01-06)
  • XGN (2026-01-06)
  • RD.1.1.1 (2026-01-07)
  • RE.3 (2026-01-07)
  • RE.3.1 (2026-01-07)
  • RE.1.1.1 (2026-01-07)
  • RE.1.1.2 (2026-01-07)
  • RE.1.1.3 (2026-01-07)
  • RE.2.1.1 (2026-01-07)
  • RE.2.1.2 (2026-01-07)
  • RE.2.1.3 (2026-01-07)
  • RE.2.3 (2026-01-07)
  • RE.2.2.1 (2026-01-07)
  • RE.2.2.2 (2026-01-07)
  • RE.2.2.3 (2026-01-07)
  • RE.2.2.4 (2026-01-07)
  • RE.2.2.5 (2026-01-07)
  • RE.2.2.6 (2026-01-07)
  • RE.2.4 (2026-01-11)
  • XFG.2.13 (2026-01-11)
  • XFG.2.13.1 (2026-01-11)
  • RR.1 (2026-01-11)
  • PQ.43 (2026-01-11)
  • PQ.43.1 (2026-01-11)
  • PQ.43.1.1 (2026-01-11)
  • PQ.43.2 (2026-01-11)
  • PQ.17.9 (2026-01-11)
  • PQ.17.10 (2026-01-11)
  • PQ.17.10.1 (2026-01-11)
  • PQ.17.11 (2026-01-11)
  • PQ.17.11.1 (2026-01-11)
  • PQ.4.10 (2026-01-11)
  • PQ.4.10.1 (2026-01-11)
  • PQ.17.12 (2026-01-11)
  • QF.7 (2026-01-11)
  • XGP (2026-01-11)
  • PP.1.2 (2026-01-12)
  • XGQ (2026-01-12)
  • PQ.17.2.1 (2026-01-12)
  • RF.5 (2026-01-14)
  • RE.1.2 (2026-01-14)
  • RS.1 (2026-01-14)
  • RT.1 (2026-01-14)
  • RE.2.2.7 (2026-01-20)
  • RE.2.2.8 (2026-01-20)
  • XFY.2 (2026-01-21)
  • XFY.3 (2026-01-21)
  • XGR (2026-01-21)
  • XGS (2026-01-21)
  • PQ.44 (2026-01-21)
  • PQ.45 (2026-01-21)
  • PQ.46 (2026-01-21)
  • PQ.46.1 (2026-01-21)
  • XFG.3.33 (2026-01-21)
  • QW.2 (2026-01-21)
  • RU.1 (2026-01-21)
  • RV.1 (2026-01-21)
  • PQ.47 (2026-01-21)
  • PQ.48 (2026-01-28)
  • PQ.48.1 (2026-01-28)
  • PQ.49 (2026-01-28)
  • XFG.6.2.2 (2026-01-28)
  • XGT (2026-01-28)
  • QF.2.4 (2026-01-28)
  • QF.2.3 (2026-01-28)
  • XFG.5.4.2 (2026-03-12)
  • RW.1 (2026-03-14)
  • RW.1.1 (2026-03-14)
  • XFZ.3 (2026-03-14)
  • XFZ.2.1 (2026-03-14)
  • XFG.5.2.7 (2026-03-14)
  • XGU (2026-03-14)
  • XFG.6.13 (2026-03-14)
  • QY.2.1 (2026-03-14)
  • XFG.14.10 (2026-03-14)
  • XFG.10.4.1 (2026-03-14)
  • RC.5 (2026-03-14)
  • RC.6 (2026-03-14)
  • XFG.1.1.3 (2026-03-14)
  • XFG.1.1.4 (2026-03-14)
  • XFG.1.1.5 (2026-03-14)
  • RY.1 (2026-03-14)
  • RY.1.1 (2026-03-14)
  • RZ.1 (2026-03-14)
  • RZ.2 (2026-03-14)
  • RZ.2.1 (2026-03-14)
  • SA.1 (2026-03-14)
  • SA.1.1 (2026-03-14)
  • PQ.2.12 (2026-03-14)
  • PQ.2.12.1 (2026-03-14)
  • PQ.2.13 (2026-03-14)
  • PQ.2.13.1 (2026-03-14)
  • XGA.4 (2026-03-15)
  • XGV (2026-03-15)
  • XGW (2026-03-15)
  • SB.1 (2026-03-15)
  • SB.1.1 (2026-03-15)
  • XFG.6.2.3 (2026-03-15)
  • SC.1 (2026-03-15)
  • XFJ.3.1.4 (2026-03-15)
  • QY.2.1.1 (2026-03-15)
  • QY.2.2 (2026-03-15)
  • QY.2.2.1 (2026-03-15)
  • QF.2.5 (2026-03-15)
  • QF.2.6 (2026-03-15)
  • SD.1 (2026-03-15)
  • SD.1.1 (2026-03-15)
  • QF.2.2.2 (2026-03-15)
  • XFG.3.17.1 (2026-03-15)
  • XFG.3.17.2 (2026-03-15)
  • SE.1 (2026-03-15)
  • SE.2 (2026-03-15)
  • SE.2.1 (2026-03-15)
  • XFG.26.1 (2026-03-15)
  • XFG.26.2 (2026-03-15)
  • XFG.26.2.1 (2026-03-15)
  • PQ.8.1.1 (2026-03-15)
  • PQ.8.1.2 (2026-03-15)
  • PQ.8.1.3 (2026-03-15)
  • PQ.8.1.4 (2026-03-15)
  • SF.1 (2026-03-15)
  • SF.1.1 (2026-03-15)
  • PQ.31.2 (2026-03-15)
  • PQ.31.1.1 (2026-03-15)
  • SG.1 (2026-03-15)
  • PQ.31.3 (2026-03-15)
  • PQ.31.3.1 (2026-03-15)
  • PQ.31.4 (2026-03-15)
  • RC.7 (2026-03-15)
  • RC.7.1 (2026-03-15)
  • RC.8 (2026-03-15)
  • RC.9 (2026-03-15)
  • RC.10 (2026-03-15)
  • PQ.2.10.1 (2026-03-15)
  • PQ.2.1.13 (2026-03-15)
  • PQ.2.1.14 (2026-03-15)
  • PQ.2.1.15 (2026-03-15)
  • PQ.2.1.16 (2026-03-15)
  • PQ.2.1.17 (2026-03-15)
  • PQ.2.14 (2026-03-15)
  • PQ.2.14.1 (2026-03-15)
  • SH.1 (2026-03-15)
  • PQ.17.12.1 (2026-03-15)
  • XFG.14.1.9 (2026-03-18)
  • XFG.14.1.10 (2026-03-18)
  • RC.7.1.1 (2026-03-18)
  • PE.1.4.4 (2026-03-18)
  • RE.4 (2026-03-18)
  • RE.1.1.4 (2026-03-18)
  • RE.1.1.5 (2026-03-18)
  • SJ.1 (2026-03-18)
  • RE.1.1.6 (2026-03-18)
  • RS.2 (2026-03-18)
  • RS.3 (2026-03-18)
  • RS.1.1 (2026-03-18)
  • RS.1.2 (2026-03-18)
  • RS.1.4 (2026-03-18)
  • RS.1.3 (2026-03-18)
  • RE.2.5 (2026-03-18)
  • SK.1 (2026-03-18)
  • SL.1 (2026-03-18)
  • RE.2.1.4 (2026-03-18)
  • RE.2.1.5 (2026-03-18)
  • RE.2.1.6 (2026-03-18)
  • RS.4 (2026-03-18)
  • RE.2.2.9 (2026-03-18)
  • SM.1 (2026-03-18)
  • RT.2 (2026-03-18)
  • SN.1 (2026-03-18)
  • RE.2.2.10 (2026-03-18)
  • QF.7.1 (2026-03-18)
  • PQ.6.1 (2026-03-18)
  • PQ.6.1.1 (2026-03-18)
  • PQ.50 (2026-03-18)
  • PQ.50.1 (2026-03-18)
  • PQ.17.11.2 (2026-03-18)
  • PQ.17.11.3 (2026-03-18)
  • RM.3 (2026-03-19)
  • RS.5 (2026-03-19)
  • XFG.4.1.6 (2026-03-19)
  • XFG.4.1.7 (2026-03-19)
  • XFG.3.6.3 (2026-03-19)
  • XFG.3.6.4 (2026-03-19)
  • SP.1 (2026-03-19)
  • SP.2 (2026-03-19)
  • SP.2.1 (2026-03-19)
  • XFG.1.1.6 (2026-03-19)
  • XFG.1.1.7 (2026-03-19)
  • SQ.1 (2026-03-20)
  • SQ.1.1 (2026-03-20)
  • SQ.2 (2026-03-20)
  • SQ.3 (2026-03-20)
  • SR.1 (2026-03-25)
  • PQ.10.1.5 (2026-03-25)
  • XFG.5.2.8 (2026-03-25)
  • QS.3 (2026-03-25)
  • QS.4 (2026-03-25)
  • PQ.16.1 (2026-03-25)
  • PQ.16.1.1 (2026-03-25)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add all 202 Pango lineages newly designated between 2025-12-24 and 2026-04-15. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • RG.2 (2026-01-06)
  • RG.3 (2026-01-06)
  • XFG.3.3.2 (2026-01-06)
  • XFG.3.3.3 (2026-01-06)
  • XGN (2026-01-06)
  • RD.1.1.1 (2026-01-07)
  • RE.3 (2026-01-07)
  • RE.3.1 (2026-01-07)
  • RE.1.1.1 (2026-01-07)
  • RE.1.1.2 (2026-01-07)
  • RE.1.1.3 (2026-01-07)
  • RE.2.1.1 (2026-01-07)
  • RE.2.1.2 (2026-01-07)
  • RE.2.1.3 (2026-01-07)
  • RE.2.3 (2026-01-07)
  • RE.2.2.1 (2026-01-07)
  • RE.2.2.2 (2026-01-07)
  • RE.2.2.3 (2026-01-07)
  • RE.2.2.4 (2026-01-07)
  • RE.2.2.5 (2026-01-07)
  • RE.2.2.6 (2026-01-07)
  • RE.2.4 (2026-01-11)
  • XFG.2.13 (2026-01-11)
  • XFG.2.13.1 (2026-01-11)
  • RR.1 (2026-01-11)
  • PQ.43 (2026-01-11)
  • PQ.43.1 (2026-01-11)
  • PQ.43.1.1 (2026-01-11)
  • PQ.43.2 (2026-01-11)
  • PQ.17.9 (2026-01-11)
  • PQ.17.10 (2026-01-11)
  • PQ.17.10.1 (2026-01-11)
  • PQ.17.11 (2026-01-11)
  • PQ.17.11.1 (2026-01-11)
  • PQ.4.10 (2026-01-11)
  • PQ.4.10.1 (2026-01-11)
  • PQ.17.12 (2026-01-11)
  • QF.7 (2026-01-11)
  • XGP (2026-01-11)
  • PP.1.2 (2026-01-12)
  • XGQ (2026-01-12)
  • PQ.17.2.1 (2026-01-12)
  • RF.5 (2026-01-14)
  • RE.1.2 (2026-01-14)
  • RS.1 (2026-01-14)
  • RT.1 (2026-01-14)
  • RE.2.2.7 (2026-01-20)
  • RE.2.2.8 (2026-01-20)
  • XFY.2 (2026-01-21)
  • XFY.3 (2026-01-21)
  • XGR (2026-01-21)
  • XGS (2026-01-21)
  • PQ.44 (2026-01-21)
  • PQ.45 (2026-01-21)
  • PQ.46 (2026-01-21)
  • PQ.46.1 (2026-01-21)
  • XFG.3.33 (2026-01-21)
  • QW.2 (2026-01-21)
  • RU.1 (2026-01-21)
  • RV.1 (2026-01-21)
  • PQ.47 (2026-01-21)
  • PQ.48 (2026-01-28)
  • PQ.48.1 (2026-01-28)
  • PQ.49 (2026-01-28)
  • XFG.6.2.2 (2026-01-28)
  • XGT (2026-01-28)
  • QF.2.4 (2026-01-28)
  • QF.2.3 (2026-01-28)
  • XFG.5.4.2 (2026-03-12)
  • RW.1 (2026-03-14)
  • RW.1.1 (2026-03-14)
  • XFZ.3 (2026-03-14)
  • XFZ.2.1 (2026-03-14)
  • XFG.5.2.7 (2026-03-14)
  • XGU (2026-03-14)
  • XFG.6.13 (2026-03-14)
  • QY.2.1 (2026-03-14)
  • XFG.14.10 (2026-03-14)
  • XFG.10.4.1 (2026-03-14)
  • RC.5 (2026-03-14)
  • RC.6 (2026-03-14)
  • XFG.1.1.3 (2026-03-14)
  • XFG.1.1.4 (2026-03-14)
  • XFG.1.1.5 (2026-03-14)
  • RY.1 (2026-03-14)
  • RY.1.1 (2026-03-14)
  • RZ.1 (2026-03-14)
  • RZ.2 (2026-03-14)
  • RZ.2.1 (2026-03-14)
  • SA.1 (2026-03-14)
  • SA.1.1 (2026-03-14)
  • PQ.2.12 (2026-03-14)
  • PQ.2.12.1 (2026-03-14)
  • PQ.2.13 (2026-03-14)
  • PQ.2.13.1 (2026-03-14)
  • XGA.4 (2026-03-15)
  • XGV (2026-03-15)
  • XGW (2026-03-15)
  • SB.1 (2026-03-15)
  • SB.1.1 (2026-03-15)
  • XFG.6.2.3 (2026-03-15)
  • SC.1 (2026-03-15)
  • XFJ.3.1.4 (2026-03-15)
  • QY.2.1.1 (2026-03-15)
  • QY.2.2 (2026-03-15)
  • QY.2.2.1 (2026-03-15)
  • QF.2.5 (2026-03-15)
  • QF.2.6 (2026-03-15)
  • SD.1 (2026-03-15)
  • SD.1.1 (2026-03-15)
  • QF.2.2.2 (2026-03-15)
  • XFG.3.17.1 (2026-03-15)
  • XFG.3.17.2 (2026-03-15)
  • SE.1 (2026-03-15)
  • SE.2 (2026-03-15)
  • SE.2.1 (2026-03-15)
  • XFG.26.1 (2026-03-15)
  • XFG.26.2 (2026-03-15)
  • XFG.26.2.1 (2026-03-15)
  • PQ.8.1.1 (2026-03-15)
  • PQ.8.1.2 (2026-03-15)
  • PQ.8.1.3 (2026-03-15)
  • PQ.8.1.4 (2026-03-15)
  • SF.1 (2026-03-15)
  • SF.1.1 (2026-03-15)
  • PQ.31.2 (2026-03-15)
  • PQ.31.1.1 (2026-03-15)
  • SG.1 (2026-03-15)
  • PQ.31.3 (2026-03-15)
  • PQ.31.3.1 (2026-03-15)
  • PQ.31.4 (2026-03-15)
  • RC.7 (2026-03-15)
  • RC.7.1 (2026-03-15)
  • RC.8 (2026-03-15)
  • RC.9 (2026-03-15)
  • RC.10 (2026-03-15)
  • PQ.2.10.1 (2026-03-15)
  • PQ.2.1.13 (2026-03-15)
  • PQ.2.1.14 (2026-03-15)
  • PQ.2.1.15 (2026-03-15)
  • PQ.2.1.16 (2026-03-15)
  • PQ.2.1.17 (2026-03-15)
  • PQ.2.14 (2026-03-15)
  • PQ.2.14.1 (2026-03-15)
  • SH.1 (2026-03-15)
  • PQ.17.12.1 (2026-03-15)
  • XFG.14.1.9 (2026-03-18)
  • XFG.14.1.10 (2026-03-18)
  • RC.7.1.1 (2026-03-18)
  • PE.1.4.4 (2026-03-18)
  • RE.4 (2026-03-18)
  • RE.1.1.4 (2026-03-18)
  • RE.1.1.5 (2026-03-18)
  • SJ.1 (2026-03-18)
  • RE.1.1.6 (2026-03-18)
  • RS.2 (2026-03-18)
  • RS.3 (2026-03-18)
  • RS.1.1 (2026-03-18)
  • RS.1.2 (2026-03-18)
  • RS.1.4 (2026-03-18)
  • RS.1.3 (2026-03-18)
  • RE.2.5 (2026-03-18)
  • SK.1 (2026-03-18)
  • SL.1 (2026-03-18)
  • RE.2.1.4 (2026-03-18)
  • RE.2.1.5 (2026-03-18)
  • RE.2.1.6 (2026-03-18)
  • RS.4 (2026-03-18)
  • RE.2.2.9 (2026-03-18)
  • SM.1 (2026-03-18)
  • RT.2 (2026-03-18)
  • SN.1 (2026-03-18)
  • RE.2.2.10 (2026-03-18)
  • QF.7.1 (2026-03-18)
  • PQ.6.1 (2026-03-18)
  • PQ.6.1.1 (2026-03-18)
  • PQ.50 (2026-03-18)
  • PQ.50.1 (2026-03-18)
  • PQ.17.11.2 (2026-03-18)
  • PQ.17.11.3 (2026-03-18)
  • RM.3 (2026-03-19)
  • RS.5 (2026-03-19)
  • XFG.4.1.6 (2026-03-19)
  • XFG.4.1.7 (2026-03-19)
  • XFG.3.6.3 (2026-03-19)
  • XFG.3.6.4 (2026-03-19)
  • SP.1 (2026-03-19)
  • SP.2 (2026-03-19)
  • SP.2.1 (2026-03-19)
  • XFG.1.1.6 (2026-03-19)
  • XFG.1.1.7 (2026-03-19)
  • SQ.1 (2026-03-20)
  • SQ.1.1 (2026-03-20)
  • SQ.2 (2026-03-20)
  • SQ.3 (2026-03-20)
  • SR.1 (2026-03-25)
  • PQ.10.1.5 (2026-03-25)
  • XFG.5.2.8 (2026-03-25)
  • QS.3 (2026-03-25)
  • QS.4 (2026-03-25)
  • PQ.16.1 (2026-03-25)
  • PQ.16.1.1 (2026-03-25)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Add all 202 Pango lineages newly designated between 2025-12-24 and 2026-04-15. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • RG.2 (2026-01-06)
  • RG.3 (2026-01-06)
  • XFG.3.3.2 (2026-01-06)
  • XFG.3.3.3 (2026-01-06)
  • XGN (2026-01-06)
  • RD.1.1.1 (2026-01-07)
  • RE.3 (2026-01-07)
  • RE.3.1 (2026-01-07)
  • RE.1.1.1 (2026-01-07)
  • RE.1.1.2 (2026-01-07)
  • RE.1.1.3 (2026-01-07)
  • RE.2.1.1 (2026-01-07)
  • RE.2.1.2 (2026-01-07)
  • RE.2.1.3 (2026-01-07)
  • RE.2.3 (2026-01-07)
  • RE.2.2.1 (2026-01-07)
  • RE.2.2.2 (2026-01-07)
  • RE.2.2.3 (2026-01-07)
  • RE.2.2.4 (2026-01-07)
  • RE.2.2.5 (2026-01-07)
  • RE.2.2.6 (2026-01-07)
  • RE.2.4 (2026-01-11)
  • XFG.2.13 (2026-01-11)
  • XFG.2.13.1 (2026-01-11)
  • RR.1 (2026-01-11)
  • PQ.43 (2026-01-11)
  • PQ.43.1 (2026-01-11)
  • PQ.43.1.1 (2026-01-11)
  • PQ.43.2 (2026-01-11)
  • PQ.17.9 (2026-01-11)
  • PQ.17.10 (2026-01-11)
  • PQ.17.10.1 (2026-01-11)
  • PQ.17.11 (2026-01-11)
  • PQ.17.11.1 (2026-01-11)
  • PQ.4.10 (2026-01-11)
  • PQ.4.10.1 (2026-01-11)
  • PQ.17.12 (2026-01-11)
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