github nextstrain/nextclade_data 2026-01-06--14-59-32Z
on GitHub

3 days ago

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Include the 6 newly designated Nextstrain clades 25D (MC.10.2.1), 25E (PY.1), 25F (NW.1.2), 25G (XFC), 25H (XFJ), and 25I (BA.3.2). See nextstrain/ncov#1192 for details.
  • Add all 77 Pango lineages newly designated between 2025-12-05 and 2025-01-05. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • PQ.2.4.3 (2025-12-11)
  • PQ.2.4.4 (2025-12-11)
  • XFG.5.1.7 (2025-12-11)
  • XGA.1 (2025-12-13)
  • XGA.2 (2025-12-13)
  • XGA.3 (2025-12-13)
  • XGG (2025-12-13)
  • QY.2 (2025-12-13)
  • QY.3 (2025-12-13)
  • XGH (2025-12-13)
  • XFZ.2 (2025-12-13)
  • XFC.3.3.1 (2025-12-13)
  • XFC.3.3.2 (2025-12-13)
  • XFC.3.4 (2025-12-13)
  • XFC.3.5 (2025-12-13)
  • XFV.4 (2025-12-13)
  • XFV.6 (2025-12-13)
  • XFV.5 (2025-12-13)
  • XFG.10.5 (2025-12-13)
  • XFG.14.1.4 (2025-12-13)
  • XFG.14.1.5 (2025-12-13)
  • XFG.14.8 (2025-12-13)
  • QQ.2 (2025-12-13)
  • QQ.3 (2025-12-13)
  • PQ.4.6.2 (2025-12-13)
  • RJ.1 (2025-12-13)
  • PQ.4.7 (2025-12-13)
  • PQ.4.8 (2025-12-13)
  • PQ.4.9 (2025-12-13)
  • RK.1 (2025-12-13)
  • XFG.2.5.1 (2025-12-13)
  • PQ.40 (2025-12-13)
  • RL.1 (2025-12-19)
  • XFG.14.1.6 (2025-12-19)
  • XFG.14.1.7 (2025-12-19)
  • XFG.14.1.8 (2025-12-19)
  • XFG.14.9 (2025-12-19)
  • RC.2.1 (2025-12-21)
  • RC.3 (2025-12-21)
  • RC.4 (2025-12-21)
  • XFG.8.1.1 (2025-12-21)
  • PQ.41 (2025-12-21)
  • PQ.41.1 (2025-12-21)
  • PQ.41.1.1 (2025-12-21)
  • RM.1 (2025-12-21)
  • RM.2 (2025-12-21)
  • RN.1 (2025-12-21)
  • RN.2 (2025-12-21)
  • XFG.3.1.11 (2025-12-21)
  • XFG.2.9 (2025-12-21)
  • XFG.2.10 (2025-12-21)
  • XFG.2.7.1 (2025-12-21)
  • XFG.2.7.2 (2025-12-21)
  • XFG.1.1.2 (2025-12-21)
  • RP.1 (2025-12-21)
  • RP.2 (2025-12-21)
  • RN.2.1 (2025-12-21)
  • XFG.37 (2025-12-21)
  • XFG.38 (2025-12-21)
  • PQ.2.5.3 (2025-12-21)
  • PQ.2.5.4 (2025-12-21)
  • RQ.1 (2025-12-21)
  • RQ.2 (2025-12-21)
  • PQ.2.5.5 (2025-12-21)
  • XFG.2.11 (2025-12-21)
  • PQ.42 (2025-12-21)
  • PQ.2.11 (2025-12-21)
  • PQ.2.11.1 (2025-12-21)
  • PQ.13.3 (2025-12-21)
  • PQ.13.3.1 (2025-12-21)
  • XFG.39 (2025-12-21)
  • XGJ (2025-12-22)
  • XFG.2.12 (2025-12-22)
  • XGK (2025-12-22)
  • XFG.3.1.12 (2025-12-22)
  • XGL (2025-12-22)
  • XGM (2025-12-23)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Include the 6 newly designated Nextstrain clades 25D (MC.10.2.1), 25E (PY.1), 25F (NW.1.2), 25G (XFC), 25H (XFJ), and 25I (BA.3.2). See nextstrain/ncov#1192 for details.
  • Add all 77 Pango lineages newly designated between 2025-12-05 and 2025-01-05. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • PQ.2.4.3 (2025-12-11)
  • PQ.2.4.4 (2025-12-11)
  • XFG.5.1.7 (2025-12-11)
  • XGA.1 (2025-12-13)
  • XGA.2 (2025-12-13)
  • XGA.3 (2025-12-13)
  • XGG (2025-12-13)
  • QY.2 (2025-12-13)
  • QY.3 (2025-12-13)
  • XGH (2025-12-13)
  • XFZ.2 (2025-12-13)
  • XFC.3.3.1 (2025-12-13)
  • XFC.3.3.2 (2025-12-13)
  • XFC.3.4 (2025-12-13)
  • XFC.3.5 (2025-12-13)
  • XFV.4 (2025-12-13)
  • XFV.6 (2025-12-13)
  • XFV.5 (2025-12-13)
  • XFG.10.5 (2025-12-13)
  • XFG.14.1.4 (2025-12-13)
  • XFG.14.1.5 (2025-12-13)
  • XFG.14.8 (2025-12-13)
  • QQ.2 (2025-12-13)
  • QQ.3 (2025-12-13)
  • PQ.4.6.2 (2025-12-13)
  • RJ.1 (2025-12-13)
  • PQ.4.7 (2025-12-13)
  • PQ.4.8 (2025-12-13)
  • PQ.4.9 (2025-12-13)
  • RK.1 (2025-12-13)
  • XFG.2.5.1 (2025-12-13)
  • PQ.40 (2025-12-13)
  • RL.1 (2025-12-19)
  • XFG.14.1.6 (2025-12-19)
  • XFG.14.1.7 (2025-12-19)
  • XFG.14.1.8 (2025-12-19)
  • XFG.14.9 (2025-12-19)
  • RC.2.1 (2025-12-21)
  • RC.3 (2025-12-21)
  • RC.4 (2025-12-21)
  • XFG.8.1.1 (2025-12-21)
  • PQ.41 (2025-12-21)
  • PQ.41.1 (2025-12-21)
  • PQ.41.1.1 (2025-12-21)
  • RM.1 (2025-12-21)
  • RM.2 (2025-12-21)
  • RN.1 (2025-12-21)
  • RN.2 (2025-12-21)
  • XFG.3.1.11 (2025-12-21)
  • XFG.2.9 (2025-12-21)
  • XFG.2.10 (2025-12-21)
  • XFG.2.7.1 (2025-12-21)
  • XFG.2.7.2 (2025-12-21)
  • XFG.1.1.2 (2025-12-21)
  • RP.1 (2025-12-21)
  • RP.2 (2025-12-21)
  • RN.2.1 (2025-12-21)
  • XFG.37 (2025-12-21)
  • XFG.38 (2025-12-21)
  • PQ.2.5.3 (2025-12-21)
  • PQ.2.5.4 (2025-12-21)
  • RQ.1 (2025-12-21)
  • RQ.2 (2025-12-21)
  • PQ.2.5.5 (2025-12-21)
  • XFG.2.11 (2025-12-21)
  • PQ.42 (2025-12-21)
  • PQ.2.11 (2025-12-21)
  • PQ.2.11.1 (2025-12-21)
  • PQ.13.3 (2025-12-21)
  • PQ.13.3.1 (2025-12-21)
  • XFG.39 (2025-12-21)
  • XGJ (2025-12-22)
  • XFG.2.12 (2025-12-22)
  • XGK (2025-12-22)
  • XFG.3.1.12 (2025-12-22)
  • XGL (2025-12-22)
  • XGM (2025-12-23)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Include the 6 newly designated Nextstrain clades 25D (MC.10.2.1), 25E (PY.1), 25F (NW.1.2), 25G (XFC), 25H (XFJ), and 25I (BA.3.2). See nextstrain/ncov#1192 for details.
  • Add all 77 Pango lineages newly designated between 2025-12-05 and 2025-01-05. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • PQ.2.4.3 (2025-12-11)
  • PQ.2.4.4 (2025-12-11)
  • XFG.5.1.7 (2025-12-11)
  • XGA.1 (2025-12-13)
  • XGA.2 (2025-12-13)
  • XGA.3 (2025-12-13)
  • XGG (2025-12-13)
  • QY.2 (2025-12-13)
  • QY.3 (2025-12-13)
  • XGH (2025-12-13)
  • XFZ.2 (2025-12-13)
  • XFC.3.3.1 (2025-12-13)
  • XFC.3.3.2 (2025-12-13)
  • XFC.3.4 (2025-12-13)
  • XFC.3.5 (2025-12-13)
  • XFV.4 (2025-12-13)
  • XFV.6 (2025-12-13)
  • XFV.5 (2025-12-13)
  • XFG.10.5 (2025-12-13)
  • XFG.14.1.4 (2025-12-13)
  • XFG.14.1.5 (2025-12-13)
  • XFG.14.8 (2025-12-13)
  • QQ.2 (2025-12-13)
  • QQ.3 (2025-12-13)
  • PQ.4.6.2 (2025-12-13)
  • RJ.1 (2025-12-13)
  • PQ.4.7 (2025-12-13)
  • PQ.4.8 (2025-12-13)
  • PQ.4.9 (2025-12-13)
  • RK.1 (2025-12-13)
  • XFG.2.5.1 (2025-12-13)
  • PQ.40 (2025-12-13)
  • RL.1 (2025-12-19)
  • XFG.14.1.6 (2025-12-19)
  • XFG.14.1.7 (2025-12-19)
  • XFG.14.1.8 (2025-12-19)
  • XFG.14.9 (2025-12-19)
  • RC.2.1 (2025-12-21)
  • RC.3 (2025-12-21)
  • RC.4 (2025-12-21)
  • XFG.8.1.1 (2025-12-21)
  • PQ.41 (2025-12-21)
  • PQ.41.1 (2025-12-21)
  • PQ.41.1.1 (2025-12-21)
  • RM.1 (2025-12-21)
  • RM.2 (2025-12-21)
  • RN.1 (2025-12-21)
  • RN.2 (2025-12-21)
  • XFG.3.1.11 (2025-12-21)
  • XFG.2.9 (2025-12-21)
  • XFG.2.10 (2025-12-21)
  • XFG.2.7.1 (2025-12-21)
  • XFG.2.7.2 (2025-12-21)
  • XFG.1.1.2 (2025-12-21)
  • RP.1 (2025-12-21)
  • RP.2 (2025-12-21)
  • RN.2.1 (2025-12-21)
  • XFG.37 (2025-12-21)
  • XFG.38 (2025-12-21)
  • PQ.2.5.3 (2025-12-21)
  • PQ.2.5.4 (2025-12-21)
  • RQ.1 (2025-12-21)
  • RQ.2 (2025-12-21)
  • PQ.2.5.5 (2025-12-21)
  • XFG.2.11 (2025-12-21)
  • PQ.42 (2025-12-21)
  • PQ.2.11 (2025-12-21)
  • PQ.2.11.1 (2025-12-21)
  • PQ.13.3 (2025-12-21)
  • PQ.13.3.1 (2025-12-21)
  • XFG.39 (2025-12-21)
  • XGJ (2025-12-22)
  • XFG.2.12 (2025-12-22)
  • XGK (2025-12-22)
  • XFG.3.1.12 (2025-12-22)
  • XGL (2025-12-22)
  • XGM (2025-12-23)
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