github nextstrain/nextclade_data 2025-09-19--14-53-06Z

16 hours ago

This release contains changes for datasets:

  • CCHF (segment L) (community/pathoplexus/cchfv/L)
  • CCHF (segment S) (community/pathoplexus/cchfv/S)
  • CCHF (segment M) (community/pathoplexus/cchfv/M)
  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • Rubella (nextstrain/rubella/genome)

CCHF (segment L) (community/pathoplexus/cchfv/L)

Initial release

CCHF (segment S) (community/pathoplexus/cchfv/S)

Initial release

CCHF (segment M) (community/pathoplexus/cchfv/M)

Initial release

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add all 172 Pango lineages newly designated between 2025-08-01 and 2025-09-18. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XFG.5.1 (2025-08-02)
  • XFG.5.2 (2025-08-02)
  • XFG.5.3 (2025-08-02)
  • XFG.7.1 (2025-08-02)
  • MC.44 (2025-08-02)
  • MC.45 (2025-08-02)
  • MC.46 (2025-08-02)
  • MC.46.1 (2025-08-02)
  • XFG.23 (2025-08-03)
  • XFG.23.1 (2025-08-03)
  • XFG.18.1 (2025-08-03)
  • QK.1 (2025-08-03)
  • PQ.2.3 (2025-08-03)
  • PQ.2.4 (2025-08-03)
  • XFG.3.4.4 (2025-08-17)
  • XFG.3.8 (2025-08-17)
  • XFG.3.8.1 (2025-08-17)
  • NY.15.2 (2025-08-17)
  • NY.15.1 (2025-08-17)
  • PQ.9.1.1 (2025-08-17)
  • XFG.2.3 (2025-08-17)
  • XFG.2.3.1 (2025-08-17)
  • QL.1 (2025-08-17)
  • QL.1.1 (2025-08-17)
  • NW.1.2.1 (2025-08-17)
  • QM.1 (2025-08-17)
  • NW.1.2.2 (2025-08-17)
  • NW.1.2.3 (2025-08-17)
  • PY.1.5 (2025-08-17)
  • PY.1.6 (2025-08-17)
  • PY.1.7 (2025-08-17)
  • PY.1.8 (2025-08-17)
  • NY.13.1 (2025-08-17)
  • NY.13.2 (2025-08-17)
  • NY.13.2.1 (2025-08-17)
  • NY.13.3.1 (2025-08-17)
  • XFG.24 (2025-08-17)
  • XFG.25 (2025-08-17)
  • NB.1.9 (2025-08-18)
  • NB.1.5.1 (2025-08-18)
  • QN.1 (2025-08-18)
  • NB.1.5.2 (2025-08-18)
  • NB.1.10 (2025-08-18)
  • NB.1.11 (2025-08-18)
  • NB.1.5.3 (2025-08-18)
  • NB.1.12 (2025-08-18)
  • NB.1.13 (2025-08-18)
  • PQ.29 (2025-08-18)
  • XFW (2025-08-20)
  • XFW.1 (2025-08-20)
  • XDY.3.1 (2025-08-20)
  • XDY.3.2 (2025-08-20)
  • XDY.3.3 (2025-08-20)
  • XFG.17.1 (2025-08-20)
  • XFG.17.2 (2025-08-20)
  • XFG.17.3 (2025-08-20)
  • LF.7.2.2 (2025-08-20)
  • XFG.3.9 (2025-08-20)
  • XFG.3.10 (2025-08-20)
  • XFG.3.11 (2025-08-20)
  • XFG.3.12 (2025-08-20)
  • XFG.3.12.1 (2025-08-20)
  • PQ.31 (2025-08-22)
  • XFG.3.13 (2025-08-22)
  • XFG.6.1 (2025-08-22)
  • XFJ.2.1 (2025-08-22)
  • XFV.1 (2025-08-22)
  • NY.13.3 (2025-08-22)
  • PQ.30 (2025-08-24)
  • XFY (2025-08-24)
  • XFZ (2025-08-24)
  • PG.3.2 (2025-08-24)
  • XFG.26 (2025-08-26)
  • XFG.27 (2025-08-26)
  • XFG.28 (2025-08-26)
  • XFG.29 (2025-08-26)
  • XFG.30 (2025-08-26)
  • XFG.31 (2025-08-26)
  • XFG.3.14 (2025-08-26)
  • XFG.3.16 (2025-08-26)
  • XFG.32 (2025-08-26)
  • XFG.10.1 (2025-08-26)
  • QK.2 (2025-08-26)
  • XFG.3.1.4 (2025-08-26)
  • XFG.17.2.1 (2025-08-26)
  • XFG.3.15 (2025-08-26)
  • LH.3 (2025-08-27)
  • XFG.3.5.2 (2025-08-30)
  • XFG.22.1 (2025-08-30)
  • XFG.17.4 (2025-09-04)
  • XFT.1 (2025-09-06)
  • XFG.3.1.5 (2025-09-06)
  • XFG.7.1.1 (2025-09-06)
  • PG.6.1 (2025-09-06)
  • NB.1.1.1 (2025-09-06)
  • PQ.17.1 (2025-09-07)
  • PQ.1.5 (2025-09-07)
  • PQ.1.6 (2025-09-07)
  • PQ.1.6.1 (2025-09-07)
  • PQ.17.2 (2025-09-07)
  • PQ.2.5 (2025-09-07)
  • XFC.1.7 (2025-09-07)
  • NW.3.1 (2025-09-07)
  • NW.3.2 (2025-09-07)
  • XFG.1.1 (2025-09-11)
  • NY.3.7 (2025-09-11)
  • XFG.4.1.1 (2025-09-12)
  • XFG.4.2 (2025-09-12)
  • PQ.4.2 (2025-09-12)
  • PQ.4.3 (2025-09-12)
  • PQ.4.4 (2025-09-12)
  • PQ.4.5 (2025-09-12)
  • XEC.42 (2025-09-13)
  • XEC.43 (2025-09-13)
  • PE.1.2 (2025-09-13)
  • PE.1.1.1 (2025-09-13)
  • PE.1.6 (2025-09-13)
  • PE.1.7 (2025-09-13)
  • PE.1.4.1 (2025-09-13)
  • PE.1.4.2 (2025-09-13)
  • PE.2 (2025-09-13)
  • PE.3 (2025-09-13)
  • QP.1 (2025-09-13)
  • NY.20 (2025-09-13)
  • NY.20.1 (2025-09-13)
  • NY.22 (2025-09-13)
  • NY.23 (2025-09-13)
  • NY.25 (2025-09-13)
  • NY.25.1 (2025-09-13)
  • NY.24 (2025-09-13)
  • XGA (2025-09-13)
  • NW.1.2.5 (2025-09-13)
  • NW.1.2.4 (2025-09-13)
  • XFG.3.17 (2025-09-13)
  • QK.3 (2025-09-13)
  • XFG.9.2 (2025-09-13)
  • PQ.32 (2025-09-13)
  • PQ.13.2 (2025-09-13)
  • PQ.33 (2025-09-13)
  • PQ.2.6 (2025-09-13)
  • PQ.25.1 (2025-09-13)
  • PQ.25.2 (2025-09-13)
  • PQ.31.1 (2025-09-13)
  • PQ.34 (2025-09-13)
  • QR.1 (2025-09-14)
  • QR.2 (2025-09-14)
  • PC.3.3 (2025-09-14)
  • PC.3.4 (2025-09-14)
  • LF.7.11.1 (2025-09-14)
  • LF.7.11.2 (2025-09-14)
  • LF.7.11.3 (2025-09-14)
  • PL.1.2 (2025-09-14)
  • PL.4 (2025-09-14)
  • PL.5 (2025-09-14)
  • XEK.7.1 (2025-09-14)
  • KP.7 (2025-09-14)
  • KP.7.1 (2025-09-14)
  • XFG.33 (2025-09-14)
  • XFG.6.2 (2025-09-14)
  • KP.3.18 (2025-09-14)
  • XFG.14.3 (2025-09-14)
  • QS.1 (2025-09-14)
  • NW.1.7.1 (2025-09-14)
  • NW.1.7.2 (2025-09-14)
  • NW.1.7.3 (2025-09-14)
  • NW.1.7.4 (2025-09-14)
  • XFG.3.18 (2025-09-14)
  • XGB (2025-09-14)
  • QS.2 (2025-09-14)
  • XFG.9.3 (2025-09-14)
  • XFG.9.4 (2025-09-14)
  • XFG.9.5 (2025-09-14)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add all 172 Pango lineages newly designated between 2025-08-01 and 2025-09-18. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XFG.5.1 (2025-08-02)
  • XFG.5.2 (2025-08-02)
  • XFG.5.3 (2025-08-02)
  • XFG.7.1 (2025-08-02)
  • MC.44 (2025-08-02)
  • MC.45 (2025-08-02)
  • MC.46 (2025-08-02)
  • MC.46.1 (2025-08-02)
  • XFG.23 (2025-08-03)
  • XFG.23.1 (2025-08-03)
  • XFG.18.1 (2025-08-03)
  • QK.1 (2025-08-03)
  • PQ.2.3 (2025-08-03)
  • PQ.2.4 (2025-08-03)
  • XFG.3.4.4 (2025-08-17)
  • XFG.3.8 (2025-08-17)
  • XFG.3.8.1 (2025-08-17)
  • NY.15.2 (2025-08-17)
  • NY.15.1 (2025-08-17)
  • PQ.9.1.1 (2025-08-17)
  • XFG.2.3 (2025-08-17)
  • XFG.2.3.1 (2025-08-17)
  • QL.1 (2025-08-17)
  • QL.1.1 (2025-08-17)
  • NW.1.2.1 (2025-08-17)
  • QM.1 (2025-08-17)
  • NW.1.2.2 (2025-08-17)
  • NW.1.2.3 (2025-08-17)
  • PY.1.5 (2025-08-17)
  • PY.1.6 (2025-08-17)
  • PY.1.7 (2025-08-17)
  • PY.1.8 (2025-08-17)
  • NY.13.1 (2025-08-17)
  • NY.13.2 (2025-08-17)
  • NY.13.2.1 (2025-08-17)
  • NY.13.3.1 (2025-08-17)
  • XFG.24 (2025-08-17)
  • XFG.25 (2025-08-17)
  • NB.1.9 (2025-08-18)
  • NB.1.5.1 (2025-08-18)
  • QN.1 (2025-08-18)
  • NB.1.5.2 (2025-08-18)
  • NB.1.10 (2025-08-18)
  • NB.1.11 (2025-08-18)
  • NB.1.5.3 (2025-08-18)
  • NB.1.12 (2025-08-18)
  • NB.1.13 (2025-08-18)
  • PQ.29 (2025-08-18)
  • XFW (2025-08-20)
  • XFW.1 (2025-08-20)
  • XDY.3.1 (2025-08-20)
  • XDY.3.2 (2025-08-20)
  • XDY.3.3 (2025-08-20)
  • XFG.17.1 (2025-08-20)
  • XFG.17.2 (2025-08-20)
  • XFG.17.3 (2025-08-20)
  • LF.7.2.2 (2025-08-20)
  • XFG.3.9 (2025-08-20)
  • XFG.3.10 (2025-08-20)
  • XFG.3.11 (2025-08-20)
  • XFG.3.12 (2025-08-20)
  • XFG.3.12.1 (2025-08-20)
  • PQ.31 (2025-08-22)
  • XFG.3.13 (2025-08-22)
  • XFG.6.1 (2025-08-22)
  • XFJ.2.1 (2025-08-22)
  • XFV.1 (2025-08-22)
  • NY.13.3 (2025-08-22)
  • PQ.30 (2025-08-24)
  • XFY (2025-08-24)
  • XFZ (2025-08-24)
  • PG.3.2 (2025-08-24)
  • XFG.26 (2025-08-26)
  • XFG.27 (2025-08-26)
  • XFG.28 (2025-08-26)
  • XFG.29 (2025-08-26)
  • XFG.30 (2025-08-26)
  • XFG.31 (2025-08-26)
  • XFG.3.14 (2025-08-26)
  • XFG.3.16 (2025-08-26)
  • XFG.32 (2025-08-26)
  • XFG.10.1 (2025-08-26)
  • QK.2 (2025-08-26)
  • XFG.3.1.4 (2025-08-26)
  • XFG.17.2.1 (2025-08-26)
  • XFG.3.15 (2025-08-26)
  • LH.3 (2025-08-27)
  • XFG.3.5.2 (2025-08-30)
  • XFG.22.1 (2025-08-30)
  • XFG.17.4 (2025-09-04)
  • XFT.1 (2025-09-06)
  • XFG.3.1.5 (2025-09-06)
  • XFG.7.1.1 (2025-09-06)
  • PG.6.1 (2025-09-06)
  • NB.1.1.1 (2025-09-06)
  • PQ.17.1 (2025-09-07)
  • PQ.1.5 (2025-09-07)
  • PQ.1.6 (2025-09-07)
  • PQ.1.6.1 (2025-09-07)
  • PQ.17.2 (2025-09-07)
  • PQ.2.5 (2025-09-07)
  • XFC.1.7 (2025-09-07)
  • NW.3.1 (2025-09-07)
  • NW.3.2 (2025-09-07)
  • XFG.1.1 (2025-09-11)
  • NY.3.7 (2025-09-11)
  • XFG.4.1.1 (2025-09-12)
  • XFG.4.2 (2025-09-12)
  • PQ.4.2 (2025-09-12)
  • PQ.4.3 (2025-09-12)
  • PQ.4.4 (2025-09-12)
  • PQ.4.5 (2025-09-12)
  • XEC.42 (2025-09-13)
  • XEC.43 (2025-09-13)
  • PE.1.2 (2025-09-13)
  • PE.1.1.1 (2025-09-13)
  • PE.1.6 (2025-09-13)
  • PE.1.7 (2025-09-13)
  • PE.1.4.1 (2025-09-13)
  • PE.1.4.2 (2025-09-13)
  • PE.2 (2025-09-13)
  • PE.3 (2025-09-13)
  • QP.1 (2025-09-13)
  • NY.20 (2025-09-13)
  • NY.20.1 (2025-09-13)
  • NY.22 (2025-09-13)
  • NY.23 (2025-09-13)
  • NY.25 (2025-09-13)
  • NY.25.1 (2025-09-13)
  • NY.24 (2025-09-13)
  • XGA (2025-09-13)
  • NW.1.2.5 (2025-09-13)
  • NW.1.2.4 (2025-09-13)
  • XFG.3.17 (2025-09-13)
  • QK.3 (2025-09-13)
  • XFG.9.2 (2025-09-13)
  • PQ.32 (2025-09-13)
  • PQ.13.2 (2025-09-13)
  • PQ.33 (2025-09-13)
  • PQ.2.6 (2025-09-13)
  • PQ.25.1 (2025-09-13)
  • PQ.25.2 (2025-09-13)
  • PQ.31.1 (2025-09-13)
  • PQ.34 (2025-09-13)
  • QR.1 (2025-09-14)
  • QR.2 (2025-09-14)
  • PC.3.3 (2025-09-14)
  • PC.3.4 (2025-09-14)
  • LF.7.11.1 (2025-09-14)
  • LF.7.11.2 (2025-09-14)
  • LF.7.11.3 (2025-09-14)
  • PL.1.2 (2025-09-14)
  • PL.4 (2025-09-14)
  • PL.5 (2025-09-14)
  • XEK.7.1 (2025-09-14)
  • KP.7 (2025-09-14)
  • KP.7.1 (2025-09-14)
  • XFG.33 (2025-09-14)
  • XFG.6.2 (2025-09-14)
  • KP.3.18 (2025-09-14)
  • XFG.14.3 (2025-09-14)
  • QS.1 (2025-09-14)
  • NW.1.7.1 (2025-09-14)
  • NW.1.7.2 (2025-09-14)
  • NW.1.7.3 (2025-09-14)
  • NW.1.7.4 (2025-09-14)
  • XFG.3.18 (2025-09-14)
  • XGB (2025-09-14)
  • QS.2 (2025-09-14)
  • XFG.9.3 (2025-09-14)
  • XFG.9.4 (2025-09-14)
  • XFG.9.5 (2025-09-14)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Add all 172 Pango lineages newly designated between 2025-08-01 and 2025-09-18. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XFG.5.1 (2025-08-02)
  • XFG.5.2 (2025-08-02)
  • XFG.5.3 (2025-08-02)
  • XFG.7.1 (2025-08-02)
  • MC.44 (2025-08-02)
  • MC.45 (2025-08-02)
  • MC.46 (2025-08-02)
  • MC.46.1 (2025-08-02)
  • XFG.23 (2025-08-03)
  • XFG.23.1 (2025-08-03)
  • XFG.18.1 (2025-08-03)
  • QK.1 (2025-08-03)
  • PQ.2.3 (2025-08-03)
  • PQ.2.4 (2025-08-03)
  • XFG.3.4.4 (2025-08-17)
  • XFG.3.8 (2025-08-17)
  • XFG.3.8.1 (2025-08-17)
  • NY.15.2 (2025-08-17)
  • NY.15.1 (2025-08-17)
  • PQ.9.1.1 (2025-08-17)
  • XFG.2.3 (2025-08-17)
  • XFG.2.3.1 (2025-08-17)
  • QL.1 (2025-08-17)
  • QL.1.1 (2025-08-17)
  • NW.1.2.1 (2025-08-17)
  • QM.1 (2025-08-17)
  • NW.1.2.2 (2025-08-17)
  • NW.1.2.3 (2025-08-17)
  • PY.1.5 (2025-08-17)
  • PY.1.6 (2025-08-17)
  • PY.1.7 (2025-08-17)
  • PY.1.8 (2025-08-17)
  • NY.13.1 (2025-08-17)
  • NY.13.2 (2025-08-17)
  • NY.13.2.1 (2025-08-17)
  • NY.13.3.1 (2025-08-17)
  • XFG.24 (2025-08-17)
  • XFG.25 (2025-08-17)
  • NB.1.9 (2025-08-18)
  • NB.1.5.1 (2025-08-18)
  • QN.1 (2025-08-18)
  • NB.1.5.2 (2025-08-18)
  • NB.1.10 (2025-08-18)
  • NB.1.11 (2025-08-18)
  • NB.1.5.3 (2025-08-18)
  • NB.1.12 (2025-08-18)
  • NB.1.13 (2025-08-18)
  • PQ.29 (2025-08-18)
  • XFW (2025-08-20)
  • XFW.1 (2025-08-20)
  • XDY.3.1 (2025-08-20)
  • XDY.3.2 (2025-08-20)
  • XDY.3.3 (2025-08-20)
  • XFG.17.1 (2025-08-20)
  • XFG.17.2 (2025-08-20)
  • XFG.17.3 (2025-08-20)
  • LF.7.2.2 (2025-08-20)
  • XFG.3.9 (2025-08-20)
  • XFG.3.10 (2025-08-20)
  • XFG.3.11 (2025-08-20)
  • XFG.3.12 (2025-08-20)
  • XFG.3.12.1 (2025-08-20)
  • PQ.31 (2025-08-22)
  • XFG.3.13 (2025-08-22)
  • XFG.6.1 (2025-08-22)
  • XFJ.2.1 (2025-08-22)
  • XFV.1 (2025-08-22)
  • NY.13.3 (2025-08-22)
  • PQ.30 (2025-08-24)
  • XFY (2025-08-24)
  • XFZ (2025-08-24)
  • PG.3.2 (2025-08-24)
  • XFG.26 (2025-08-26)
  • XFG.27 (2025-08-26)
  • XFG.28 (2025-08-26)
  • XFG.29 (2025-08-26)
  • XFG.30 (2025-08-26)
  • XFG.31 (2025-08-26)
  • XFG.3.14 (2025-08-26)
  • XFG.3.16 (2025-08-26)
  • XFG.32 (2025-08-26)
  • XFG.10.1 (2025-08-26)
  • QK.2 (2025-08-26)
  • XFG.3.1.4 (2025-08-26)
  • XFG.17.2.1 (2025-08-26)
  • XFG.3.15 (2025-08-26)
  • LH.3 (2025-08-27)
  • XFG.3.5.2 (2025-08-30)
  • XFG.22.1 (2025-08-30)
  • XFG.17.4 (2025-09-04)
  • XFT.1 (2025-09-06)
  • XFG.3.1.5 (2025-09-06)
  • XFG.7.1.1 (2025-09-06)
  • PG.6.1 (2025-09-06)
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  • PQ.1.6.1 (2025-09-07)
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  • PQ.4.5 (2025-09-12)
  • XEC.42 (2025-09-13)
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  • XFG.9.3 (2025-09-14)
  • XFG.9.4 (2025-09-14)
  • XFG.9.5 (2025-09-14)

Rubella (nextstrain/rubella/genome)

Initial release.

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