This release contains changes for datasets:
- SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
- SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
- SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
- SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
- SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
- Mpox virus (All clades) (nextstrain/mpox/all-clades)
- Mpox virus (Clade I) (nextstrain/mpox/clade-i)
- Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)
- Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)
- H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)
SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
Fix duplicate changelog entry, nothing else changed.
SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
Fix duplicate changelog entry, nothing else changed.
SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
Fix duplicate changelog entry, nothing else changed.
SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
Fix duplicate changelog entry, nothing else changed.
SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
Fix duplicate changelog entry, nothing else changed.
Mpox virus (All clades) (nextstrain/mpox/all-clades)
- 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
- Newly shared sequences are now included
Mpox virus (Clade I) (nextstrain/mpox/clade-i)
- Newly shared sequences are now included
Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)
- 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
- Newly shared sequences are now included
- The cluster QC metric's window size has been broadened to detect clusters that span a region of up to 1000bp (up from 100bp)
Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)
- 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
- Newly shared sequences are now included
- The cluster QC metric's window size has been broadened to detect clusters that span a region of up to 1000bp (up from 100bp)
H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)
Updated tree.json to add mutation calling relative to A/American_wigeon/North_Carolina/AH0182517/2022