github nextstrain/nextclade_data 2024-07-17--12-57-03Z
on GitHub

latest releases: 2024-11-05--09-19-52Z, 2024-10-17--16-48-48Z, 2024-09-25--21-50-30Z...
3 months ago

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)
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