This release contains changes for datasets:
- SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
- SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
- SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
- SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
- SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
- Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
- Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
- Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
- Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
-
add representative samples from early pandemic-era clades including 1, 2, 3, 4, 6C, 7, and 8 to improve clade label annotations for older sequences
-
added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage. See Nextclade documentation for more details about 'relative mutations' functionality.
Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.
Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.
The datasets themselves remain unchanged.
See Nextclade documentation for more details about 'relative mutations' functionality.