github nextstrain/nextclade_data 2024-06-13--23-42-47Z
on GitHub

latest release: 2024-06-18--19-09-40Z
17 days ago

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
  • All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
  • Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.
Newly included lineages, with designation date in parentheses
  • KP.4 (2024-04-15)
  • KP.4.1 (2024-04-15)
  • KP.4.2 (2024-04-15)
  • KP.1.2 (2024-04-15)
  • KP.2.3 (2024-04-15)
  • JN.1.47 (2024-04-15)
  • JN.1.47.1 (2024-04-15)
  • JN.1.47.2 (2024-04-15)
  • JN.1.16.2 (2024-04-15)
  • LA.1 (2024-04-15)
  • LA.2 (2024-04-15)
  • JN.1.9.2 (2024-04-15)
  • LB.2 (2024-04-15)
  • JN.1.7.4 (2024-04-15)
  • JN.1.24.1 (2024-04-15)
  • LC.1 (2024-04-15)
  • JN.1.32.1 (2024-04-15)
  • KW.1.2 (2024-04-15)
  • JN.1.8.4 (2024-04-15)
  • JN.1.48 (2024-04-15)
  • JN.1.48.1 (2024-04-15)
  • LB.1 (2024-04-16)
  • XDW (2024-04-18)
  • XDQ.2 (2024-04-18)
  • XDQ.3 (2024-04-18)
  • XDQ.1.1 (2024-05-15)
  • XDK.1.1 (2024-05-15)
  • XDK.1.2 (2024-05-15)
  • XDK.2 (2024-05-15)
  • XDK.3 (2024-05-15)
  • XDR.1 (2024-05-15)
  • KP.2.4 (2024-05-15)
  • KP.2.5 (2024-05-15)
  • KP.2.6 (2024-05-15)
  • KP.2.7 (2024-05-15)
  • KP.2.3.1 (2024-05-15)
  • KP.4.2.1 (2024-05-15)
  • KP.2.8 (2024-05-15)
  • KP.2.9 (2024-05-15)
  • KP.2.10 (2024-05-15)
  • KP.2.11 (2024-05-15)
  • KP.2.12 (2024-05-15)
  • LD.1 (2024-05-15)
  • JN.1.48.2 (2024-05-15)
  • KP.1.1.2 (2024-05-15)
  • LE.1 (2024-05-15)
  • LE.1.1 (2024-05-15)
  • LE.1.2 (2024-05-15)
  • LE.2 (2024-05-15)
  • LF.1 (2024-05-15)
  • LF.1.1 (2024-05-15)
  • JN.1.42.2 (2024-05-15)
  • JN.1.49 (2024-05-15)
  • JN.1.49.1 (2024-05-15)
  • JN.1.49.2 (2024-05-15)
  • KW.1.1.1 (2024-05-15)
  • LG.1 (2024-05-15)
  • JN.1.39.1 (2024-05-15)
  • JN.1.39.2 (2024-05-16)
  • KP.5 (2024-05-16)
  • KP.3.1 (2024-05-16)
  • KP.3.2 (2024-05-16)
  • KP.3.3 (2024-05-16)
  • JN.1.39.3 (2024-05-16)
  • JN.15 (2024-05-16)
  • JN.3.3 (2024-05-16)
  • JN.16 (2024-05-16)
  • JN.17 (2024-05-16)
  • JN.11.1 (2024-05-16)
  • BA.2.86.6 (2024-05-16)
  • JN.18 (2024-05-16)
  • JQ.2.1.1 (2024-05-16)
  • JN.19 (2024-05-16)
  • JN.1.1.8 (2024-05-17)
  • KP.2.13 (2024-05-17)
  • JN.1.50 (2024-05-18)
  • JN.1.23.1 (2024-05-28)
  • JN.1.29.1 (2024-05-28)
  • JN.1.18.3 (2024-05-28)
  • JN.1.18.4 (2024-05-28)
  • LH.1 (2024-05-28)
  • LH.2 (2024-05-28)
  • KP.1.1.3 (2024-05-28)
  • KP.3.1.1 (2024-05-28)
  • KP.2.14 (2024-05-28)
  • JN.1.51 (2024-05-28)
  • JN.1.51.1 (2024-05-28)
  • LJ.1 (2024-05-28)
  • LF.2 (2024-05-28)
  • JN.1.52 (2024-05-28)
  • JN.1.7.5 (2024-05-28)
  • LK.1 (2024-05-28)
  • JN.1.50.1 (2024-05-28)
  • LF.3 (2024-05-28)
  • KP.4.2.2 (2024-05-28)
  • XDK.4 (2024-05-28)
  • XDK.4.1 (2024-05-28)
  • XDK.5 (2024-05-28)
  • XDK.6 (2024-05-28)
  • LL.1 (2024-05-28)
  • LM.1 (2024-05-28)
  • KS.1.1 (2024-05-28)
  • JN.1.53 (2024-05-28)
  • JN.1.53.1 (2024-05-28)
  • LN.1 (2024-05-28)
  • LN.1.1 (2024-05-28)
  • JN.1.54 (2024-05-28)
  • JN.1.54.1 (2024-05-28)
  • LP.1 (2024-05-28)
  • KP.3.4 (2024-05-29)
  • KP.3.2.1 (2024-05-29)
  • KP.2.15 (2024-05-30)
  • KR.1.1 (2024-05-30)
  • KR.1.2 (2024-05-30)
  • KR.3 (2024-05-30)
  • KR.4 (2024-05-30)
  • KR.5 (2024-05-30)
  • KS.1.2 (2024-05-30)
  • JN.1.55 (2024-05-30)
  • JN.1.55.1 (2024-05-30)
  • JN.1.55.2 (2024-05-30)
  • KP.3.2.2 (2024-05-30)
  • JN.1.56 (2024-05-31)
  • JN.1.56.1 (2024-05-31)
  • JN.1.44.1 (2024-05-31)
  • LB.1.1 (2024-06-04)
  • LB.1.2 (2024-06-04)
  • LB.1.2.1 (2024-06-04)
  • LB.1.3 (2024-06-04)
  • LB.1.4 (2024-06-04)
  • LB.1.5 (2024-06-04)
  • LB.1.6 (2024-06-04)
  • KP.2.3.2 (2024-06-04)
  • KP.2.16 (2024-06-04)
  • LF.3.1 (2024-06-04)
  • KP.3.1.2 (2024-06-04)
  • KP.3.1.3 (2024-06-04)
  • KP.3.1.4 (2024-06-04)
  • KP.3.2.3 (2024-06-04)
  • KP.3.2.4 (2024-06-04)
  • LB.1.7 (2024-06-04)
  • LF.1.1.1 (2024-06-04)
  • KP.1.1.4 (2024-06-04)
  • LP.2 (2024-06-04)
  • XDY (2024-06-04)
  • LQ.1 (2024-06-04)
  • LQ.1.1 (2024-06-04)
  • LQ.2 (2024-06-04)
  • LQ.3 (2024-06-04)
  • JN.1.4.8 (2024-06-04)
  • JN.1.7.6 (2024-06-04)
  • JN.1.57 (2024-06-04)
  • JN.1.57.1 (2024-06-04)
  • JN.1.58 (2024-06-04)
  • JN.1.58.1 (2024-06-04)
  • JN.1.58.2 (2024-06-04)
  • LR.1 (2024-06-04)
  • LR.2 (2024-06-04)
  • JN.1.59 (2024-06-05)
  • JN.1.7.7 (2024-06-05)
  • JN.1.60 (2024-06-05)
  • JN.1.61 (2024-06-05)
  • JN.1.18.5 (2024-06-07)
  • LS.1 (2024-06-07)
  • KP.2.3.3 (2024-06-07)
  • JN.1.62 (2024-06-08)
  • KP.3.2.5 (2024-06-09)
  • LT.1 (2024-06-10)
  • JN.1.1.9 (2024-06-10)
  • JN.1.16.3 (2024-06-10)
  • JN.1.15.1 (2024-06-10)
  • LU.1 (2024-06-10)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
  • All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
  • Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.
Newly included lineages, with designation date in parentheses
  • KP.4 (2024-04-15)
  • KP.4.1 (2024-04-15)
  • KP.4.2 (2024-04-15)
  • KP.1.2 (2024-04-15)
  • KP.2.3 (2024-04-15)
  • JN.1.47 (2024-04-15)
  • JN.1.47.1 (2024-04-15)
  • JN.1.47.2 (2024-04-15)
  • JN.1.16.2 (2024-04-15)
  • LA.1 (2024-04-15)
  • LA.2 (2024-04-15)
  • JN.1.9.2 (2024-04-15)
  • LB.2 (2024-04-15)
  • JN.1.7.4 (2024-04-15)
  • JN.1.24.1 (2024-04-15)
  • LC.1 (2024-04-15)
  • JN.1.32.1 (2024-04-15)
  • KW.1.2 (2024-04-15)
  • JN.1.8.4 (2024-04-15)
  • JN.1.48 (2024-04-15)
  • JN.1.48.1 (2024-04-15)
  • LB.1 (2024-04-16)
  • XDW (2024-04-18)
  • XDQ.2 (2024-04-18)
  • XDQ.3 (2024-04-18)
  • XDQ.1.1 (2024-05-15)
  • XDK.1.1 (2024-05-15)
  • XDK.1.2 (2024-05-15)
  • XDK.2 (2024-05-15)
  • XDK.3 (2024-05-15)
  • XDR.1 (2024-05-15)
  • KP.2.4 (2024-05-15)
  • KP.2.5 (2024-05-15)
  • KP.2.6 (2024-05-15)
  • KP.2.7 (2024-05-15)
  • KP.2.3.1 (2024-05-15)
  • KP.4.2.1 (2024-05-15)
  • KP.2.8 (2024-05-15)
  • KP.2.9 (2024-05-15)
  • KP.2.10 (2024-05-15)
  • KP.2.11 (2024-05-15)
  • KP.2.12 (2024-05-15)
  • LD.1 (2024-05-15)
  • JN.1.48.2 (2024-05-15)
  • KP.1.1.2 (2024-05-15)
  • LE.1 (2024-05-15)
  • LE.1.1 (2024-05-15)
  • LE.1.2 (2024-05-15)
  • LE.2 (2024-05-15)
  • LF.1 (2024-05-15)
  • LF.1.1 (2024-05-15)
  • JN.1.42.2 (2024-05-15)
  • JN.1.49 (2024-05-15)
  • JN.1.49.1 (2024-05-15)
  • JN.1.49.2 (2024-05-15)
  • KW.1.1.1 (2024-05-15)
  • LG.1 (2024-05-15)
  • JN.1.39.1 (2024-05-15)
  • JN.1.39.2 (2024-05-16)
  • KP.5 (2024-05-16)
  • KP.3.1 (2024-05-16)
  • KP.3.2 (2024-05-16)
  • KP.3.3 (2024-05-16)
  • JN.1.39.3 (2024-05-16)
  • JN.15 (2024-05-16)
  • JN.3.3 (2024-05-16)
  • JN.16 (2024-05-16)
  • JN.17 (2024-05-16)
  • JN.11.1 (2024-05-16)
  • BA.2.86.6 (2024-05-16)
  • JN.18 (2024-05-16)
  • JQ.2.1.1 (2024-05-16)
  • JN.19 (2024-05-16)
  • JN.1.1.8 (2024-05-17)
  • KP.2.13 (2024-05-17)
  • JN.1.50 (2024-05-18)
  • JN.1.23.1 (2024-05-28)
  • JN.1.29.1 (2024-05-28)
  • JN.1.18.3 (2024-05-28)
  • JN.1.18.4 (2024-05-28)
  • LH.1 (2024-05-28)
  • LH.2 (2024-05-28)
  • KP.1.1.3 (2024-05-28)
  • KP.3.1.1 (2024-05-28)
  • KP.2.14 (2024-05-28)
  • JN.1.51 (2024-05-28)
  • JN.1.51.1 (2024-05-28)
  • LJ.1 (2024-05-28)
  • LF.2 (2024-05-28)
  • JN.1.52 (2024-05-28)
  • JN.1.7.5 (2024-05-28)
  • LK.1 (2024-05-28)
  • JN.1.50.1 (2024-05-28)
  • LF.3 (2024-05-28)
  • KP.4.2.2 (2024-05-28)
  • XDK.4 (2024-05-28)
  • XDK.4.1 (2024-05-28)
  • XDK.5 (2024-05-28)
  • XDK.6 (2024-05-28)
  • LL.1 (2024-05-28)
  • LM.1 (2024-05-28)
  • KS.1.1 (2024-05-28)
  • JN.1.53 (2024-05-28)
  • JN.1.53.1 (2024-05-28)
  • LN.1 (2024-05-28)
  • LN.1.1 (2024-05-28)
  • JN.1.54 (2024-05-28)
  • JN.1.54.1 (2024-05-28)
  • LP.1 (2024-05-28)
  • KP.3.4 (2024-05-29)
  • KP.3.2.1 (2024-05-29)
  • KP.2.15 (2024-05-30)
  • KR.1.1 (2024-05-30)
  • KR.1.2 (2024-05-30)
  • KR.3 (2024-05-30)
  • KR.4 (2024-05-30)
  • KR.5 (2024-05-30)
  • KS.1.2 (2024-05-30)
  • JN.1.55 (2024-05-30)
  • JN.1.55.1 (2024-05-30)
  • JN.1.55.2 (2024-05-30)
  • KP.3.2.2 (2024-05-30)
  • JN.1.56 (2024-05-31)
  • JN.1.56.1 (2024-05-31)
  • JN.1.44.1 (2024-05-31)
  • LB.1.1 (2024-06-04)
  • LB.1.2 (2024-06-04)
  • LB.1.2.1 (2024-06-04)
  • LB.1.3 (2024-06-04)
  • LB.1.4 (2024-06-04)
  • LB.1.5 (2024-06-04)
  • LB.1.6 (2024-06-04)
  • KP.2.3.2 (2024-06-04)
  • KP.2.16 (2024-06-04)
  • LF.3.1 (2024-06-04)
  • KP.3.1.2 (2024-06-04)
  • KP.3.1.3 (2024-06-04)
  • KP.3.1.4 (2024-06-04)
  • KP.3.2.3 (2024-06-04)
  • KP.3.2.4 (2024-06-04)
  • LB.1.7 (2024-06-04)
  • LF.1.1.1 (2024-06-04)
  • KP.1.1.4 (2024-06-04)
  • LP.2 (2024-06-04)
  • XDY (2024-06-04)
  • LQ.1 (2024-06-04)
  • LQ.1.1 (2024-06-04)
  • LQ.2 (2024-06-04)
  • LQ.3 (2024-06-04)
  • JN.1.4.8 (2024-06-04)
  • JN.1.7.6 (2024-06-04)
  • JN.1.57 (2024-06-04)
  • JN.1.57.1 (2024-06-04)
  • JN.1.58 (2024-06-04)
  • JN.1.58.1 (2024-06-04)
  • JN.1.58.2 (2024-06-04)
  • LR.1 (2024-06-04)
  • LR.2 (2024-06-04)
  • JN.1.59 (2024-06-05)
  • JN.1.7.7 (2024-06-05)
  • JN.1.60 (2024-06-05)
  • JN.1.61 (2024-06-05)
  • JN.1.18.5 (2024-06-07)
  • LS.1 (2024-06-07)
  • KP.2.3.3 (2024-06-07)
  • JN.1.62 (2024-06-08)
  • KP.3.2.5 (2024-06-09)
  • LT.1 (2024-06-10)
  • JN.1.1.9 (2024-06-10)
  • JN.1.16.3 (2024-06-10)
  • JN.1.15.1 (2024-06-10)
  • LU.1 (2024-06-10)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
  • All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
  • Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.
Newly included lineages, with designation date in parentheses
  • KP.4 (2024-04-15)
  • KP.4.1 (2024-04-15)
  • KP.4.2 (2024-04-15)
  • KP.1.2 (2024-04-15)
  • KP.2.3 (2024-04-15)
  • JN.1.47 (2024-04-15)
  • JN.1.47.1 (2024-04-15)
  • JN.1.47.2 (2024-04-15)
  • JN.1.16.2 (2024-04-15)
  • LA.1 (2024-04-15)
  • LA.2 (2024-04-15)
  • JN.1.9.2 (2024-04-15)
  • LB.2 (2024-04-15)
  • JN.1.7.4 (2024-04-15)
  • JN.1.24.1 (2024-04-15)
  • LC.1 (2024-04-15)
  • JN.1.32.1 (2024-04-15)
  • KW.1.2 (2024-04-15)
  • JN.1.8.4 (2024-04-15)
  • JN.1.48 (2024-04-15)
  • JN.1.48.1 (2024-04-15)
  • LB.1 (2024-04-16)
  • XDW (2024-04-18)
  • XDQ.2 (2024-04-18)
  • XDQ.3 (2024-04-18)
  • XDQ.1.1 (2024-05-15)
  • XDK.1.1 (2024-05-15)
  • XDK.1.2 (2024-05-15)
  • XDK.2 (2024-05-15)
  • XDK.3 (2024-05-15)
  • XDR.1 (2024-05-15)
  • KP.2.4 (2024-05-15)
  • KP.2.5 (2024-05-15)
  • KP.2.6 (2024-05-15)
  • KP.2.7 (2024-05-15)
  • KP.2.3.1 (2024-05-15)
  • KP.4.2.1 (2024-05-15)
  • KP.2.8 (2024-05-15)
  • KP.2.9 (2024-05-15)
  • KP.2.10 (2024-05-15)
  • KP.2.11 (2024-05-15)
  • KP.2.12 (2024-05-15)
  • LD.1 (2024-05-15)
  • JN.1.48.2 (2024-05-15)
  • KP.1.1.2 (2024-05-15)
  • LE.1 (2024-05-15)
  • LE.1.1 (2024-05-15)
  • LE.1.2 (2024-05-15)
  • LE.2 (2024-05-15)
  • LF.1 (2024-05-15)
  • LF.1.1 (2024-05-15)
  • JN.1.42.2 (2024-05-15)
  • JN.1.49 (2024-05-15)
  • JN.1.49.1 (2024-05-15)
  • JN.1.49.2 (2024-05-15)
  • KW.1.1.1 (2024-05-15)
  • LG.1 (2024-05-15)
  • JN.1.39.1 (2024-05-15)
  • JN.1.39.2 (2024-05-16)
  • KP.5 (2024-05-16)
  • KP.3.1 (2024-05-16)
  • KP.3.2 (2024-05-16)
  • KP.3.3 (2024-05-16)
  • JN.1.39.3 (2024-05-16)
  • JN.15 (2024-05-16)
  • JN.3.3 (2024-05-16)
  • JN.16 (2024-05-16)
  • JN.17 (2024-05-16)
  • JN.11.1 (2024-05-16)
  • BA.2.86.6 (2024-05-16)
  • JN.18 (2024-05-16)
  • JQ.2.1.1 (2024-05-16)
  • JN.19 (2024-05-16)
  • JN.1.1.8 (2024-05-17)
  • KP.2.13 (2024-05-17)
  • JN.1.50 (2024-05-18)
  • JN.1.23.1 (2024-05-28)
  • JN.1.29.1 (2024-05-28)
  • JN.1.18.3 (2024-05-28)
  • JN.1.18.4 (2024-05-28)
  • LH.1 (2024-05-28)
  • LH.2 (2024-05-28)
  • KP.1.1.3 (2024-05-28)
  • KP.3.1.1 (2024-05-28)
  • KP.2.14 (2024-05-28)
  • JN.1.51 (2024-05-28)
  • JN.1.51.1 (2024-05-28)
  • LJ.1 (2024-05-28)
  • LF.2 (2024-05-28)
  • JN.1.52 (2024-05-28)
  • JN.1.7.5 (2024-05-28)
  • LK.1 (2024-05-28)
  • JN.1.50.1 (2024-05-28)
  • LF.3 (2024-05-28)
  • KP.4.2.2 (2024-05-28)
  • XDK.4 (2024-05-28)
  • XDK.4.1 (2024-05-28)
  • XDK.5 (2024-05-28)
  • XDK.6 (2024-05-28)
  • LL.1 (2024-05-28)
  • LM.1 (2024-05-28)
  • KS.1.1 (2024-05-28)
  • JN.1.53 (2024-05-28)
  • JN.1.53.1 (2024-05-28)
  • LN.1 (2024-05-28)
  • LN.1.1 (2024-05-28)
  • JN.1.54 (2024-05-28)
  • JN.1.54.1 (2024-05-28)
  • LP.1 (2024-05-28)
  • KP.3.4 (2024-05-29)
  • KP.3.2.1 (2024-05-29)
  • KP.2.15 (2024-05-30)
  • KR.1.1 (2024-05-30)
  • KR.1.2 (2024-05-30)
  • KR.3 (2024-05-30)
  • KR.4 (2024-05-30)
  • KR.5 (2024-05-30)
  • KS.1.2 (2024-05-30)
  • JN.1.55 (2024-05-30)
  • JN.1.55.1 (2024-05-30)
  • JN.1.55.2 (2024-05-30)
  • KP.3.2.2 (2024-05-30)
  • JN.1.56 (2024-05-31)
  • JN.1.56.1 (2024-05-31)
  • JN.1.44.1 (2024-05-31)
  • LB.1.1 (2024-06-04)
  • LB.1.2 (2024-06-04)
  • LB.1.2.1 (2024-06-04)
  • LB.1.3 (2024-06-04)
  • LB.1.4 (2024-06-04)
  • LB.1.5 (2024-06-04)
  • LB.1.6 (2024-06-04)
  • KP.2.3.2 (2024-06-04)
  • KP.2.16 (2024-06-04)
  • LF.3.1 (2024-06-04)
  • KP.3.1.2 (2024-06-04)
  • KP.3.1.3 (2024-06-04)
  • KP.3.1.4 (2024-06-04)
  • KP.3.2.3 (2024-06-04)
  • KP.3.2.4 (2024-06-04)
  • LB.1.7 (2024-06-04)
  • LF.1.1.1 (2024-06-04)
  • KP.1.1.4 (2024-06-04)
  • LP.2 (2024-06-04)
  • XDY (2024-06-04)
  • LQ.1 (2024-06-04)
  • LQ.1.1 (2024-06-04)
  • LQ.2 (2024-06-04)
  • LQ.3 (2024-06-04)
  • JN.1.4.8 (2024-06-04)
  • JN.1.7.6 (2024-06-04)
  • JN.1.57 (2024-06-04)
  • JN.1.57.1 (2024-06-04)
  • JN.1.58 (2024-06-04)
  • JN.1.58.1 (2024-06-04)
  • JN.1.58.2 (2024-06-04)
  • LR.1 (2024-06-04)
  • LR.2 (2024-06-04)
  • JN.1.59 (2024-06-05)
  • JN.1.7.7 (2024-06-05)
  • JN.1.60 (2024-06-05)
  • JN.1.61 (2024-06-05)
  • JN.1.18.5 (2024-06-07)
  • LS.1 (2024-06-07)
  • KP.2.3.3 (2024-06-07)
  • JN.1.62 (2024-06-08)
  • KP.3.2.5 (2024-06-09)
  • LT.1 (2024-06-10)
  • JN.1.1.9 (2024-06-10)
  • JN.1.16.3 (2024-06-10)
  • JN.1.15.1 (2024-06-10)
  • LU.1 (2024-06-10)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
  • All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
  • Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.
Newly included lineages, with designation date in parentheses
  • KP.4 (2024-04-15)
  • KP.4.1 (2024-04-15)
  • KP.4.2 (2024-04-15)
  • KP.1.2 (2024-04-15)
  • KP.2.3 (2024-04-15)
  • JN.1.47 (2024-04-15)
  • JN.1.47.1 (2024-04-15)
  • JN.1.47.2 (2024-04-15)
  • JN.1.16.2 (2024-04-15)
  • LA.1 (2024-04-15)
  • LA.2 (2024-04-15)
  • JN.1.9.2 (2024-04-15)
  • LB.2 (2024-04-15)
  • JN.1.7.4 (2024-04-15)
  • JN.1.24.1 (2024-04-15)
  • LC.1 (2024-04-15)
  • JN.1.32.1 (2024-04-15)
  • KW.1.2 (2024-04-15)
  • JN.1.8.4 (2024-04-15)
  • JN.1.48 (2024-04-15)
  • JN.1.48.1 (2024-04-15)
  • LB.1 (2024-04-16)
  • XDW (2024-04-18)
  • XDQ.2 (2024-04-18)
  • XDQ.3 (2024-04-18)
  • XDQ.1.1 (2024-05-15)
  • XDK.1.1 (2024-05-15)
  • XDK.1.2 (2024-05-15)
  • XDK.2 (2024-05-15)
  • XDK.3 (2024-05-15)
  • XDR.1 (2024-05-15)
  • KP.2.4 (2024-05-15)
  • KP.2.5 (2024-05-15)
  • KP.2.6 (2024-05-15)
  • KP.2.7 (2024-05-15)
  • KP.2.3.1 (2024-05-15)
  • KP.4.2.1 (2024-05-15)
  • KP.2.8 (2024-05-15)
  • KP.2.9 (2024-05-15)
  • KP.2.10 (2024-05-15)
  • KP.2.11 (2024-05-15)
  • KP.2.12 (2024-05-15)
  • LD.1 (2024-05-15)
  • JN.1.48.2 (2024-05-15)
  • KP.1.1.2 (2024-05-15)
  • LE.1 (2024-05-15)
  • LE.1.1 (2024-05-15)
  • LE.1.2 (2024-05-15)
  • LE.2 (2024-05-15)
  • LF.1 (2024-05-15)
  • LF.1.1 (2024-05-15)
  • JN.1.42.2 (2024-05-15)
  • JN.1.49 (2024-05-15)
  • JN.1.49.1 (2024-05-15)
  • JN.1.49.2 (2024-05-15)
  • KW.1.1.1 (2024-05-15)
  • LG.1 (2024-05-15)
  • JN.1.39.1 (2024-05-15)
  • JN.1.39.2 (2024-05-16)
  • KP.5 (2024-05-16)
  • KP.3.1 (2024-05-16)
  • KP.3.2 (2024-05-16)
  • KP.3.3 (2024-05-16)
  • JN.1.39.3 (2024-05-16)
  • JN.15 (2024-05-16)
  • JN.3.3 (2024-05-16)
  • JN.16 (2024-05-16)
  • JN.17 (2024-05-16)
  • JN.11.1 (2024-05-16)
  • BA.2.86.6 (2024-05-16)
  • JN.18 (2024-05-16)
  • JQ.2.1.1 (2024-05-16)
  • JN.19 (2024-05-16)
  • JN.1.1.8 (2024-05-17)
  • KP.2.13 (2024-05-17)
  • JN.1.50 (2024-05-18)
  • JN.1.23.1 (2024-05-28)
  • JN.1.29.1 (2024-05-28)
  • JN.1.18.3 (2024-05-28)
  • JN.1.18.4 (2024-05-28)
  • LH.1 (2024-05-28)
  • LH.2 (2024-05-28)
  • KP.1.1.3 (2024-05-28)
  • KP.3.1.1 (2024-05-28)
  • KP.2.14 (2024-05-28)
  • JN.1.51 (2024-05-28)
  • JN.1.51.1 (2024-05-28)
  • LJ.1 (2024-05-28)
  • LF.2 (2024-05-28)
  • JN.1.52 (2024-05-28)
  • JN.1.7.5 (2024-05-28)
  • LK.1 (2024-05-28)
  • JN.1.50.1 (2024-05-28)
  • LF.3 (2024-05-28)
  • KP.4.2.2 (2024-05-28)
  • XDK.4 (2024-05-28)
  • XDK.4.1 (2024-05-28)
  • XDK.5 (2024-05-28)
  • XDK.6 (2024-05-28)
  • LL.1 (2024-05-28)
  • LM.1 (2024-05-28)
  • KS.1.1 (2024-05-28)
  • JN.1.53 (2024-05-28)
  • JN.1.53.1 (2024-05-28)
  • LN.1 (2024-05-28)
  • LN.1.1 (2024-05-28)
  • JN.1.54 (2024-05-28)
  • JN.1.54.1 (2024-05-28)
  • LP.1 (2024-05-28)
  • KP.3.4 (2024-05-29)
  • KP.3.2.1 (2024-05-29)
  • KP.2.15 (2024-05-30)
  • KR.1.1 (2024-05-30)
  • KR.1.2 (2024-05-30)
  • KR.3 (2024-05-30)
  • KR.4 (2024-05-30)
  • KR.5 (2024-05-30)
  • KS.1.2 (2024-05-30)
  • JN.1.55 (2024-05-30)
  • JN.1.55.1 (2024-05-30)
  • JN.1.55.2 (2024-05-30)
  • KP.3.2.2 (2024-05-30)
  • JN.1.56 (2024-05-31)
  • JN.1.56.1 (2024-05-31)
  • JN.1.44.1 (2024-05-31)
  • LB.1.1 (2024-06-04)
  • LB.1.2 (2024-06-04)
  • LB.1.2.1 (2024-06-04)
  • LB.1.3 (2024-06-04)
  • LB.1.4 (2024-06-04)
  • LB.1.5 (2024-06-04)
  • LB.1.6 (2024-06-04)
  • KP.2.3.2 (2024-06-04)
  • KP.2.16 (2024-06-04)
  • LF.3.1 (2024-06-04)
  • KP.3.1.2 (2024-06-04)
  • KP.3.1.3 (2024-06-04)
  • KP.3.1.4 (2024-06-04)
  • KP.3.2.3 (2024-06-04)
  • KP.3.2.4 (2024-06-04)
  • LB.1.7 (2024-06-04)
  • LF.1.1.1 (2024-06-04)
  • KP.1.1.4 (2024-06-04)
  • LP.2 (2024-06-04)
  • XDY (2024-06-04)
  • LQ.1 (2024-06-04)
  • LQ.1.1 (2024-06-04)
  • LQ.2 (2024-06-04)
  • LQ.3 (2024-06-04)
  • JN.1.4.8 (2024-06-04)
  • JN.1.7.6 (2024-06-04)
  • JN.1.57 (2024-06-04)
  • JN.1.57.1 (2024-06-04)
  • JN.1.58 (2024-06-04)
  • JN.1.58.1 (2024-06-04)
  • JN.1.58.2 (2024-06-04)
  • LR.1 (2024-06-04)
  • LR.2 (2024-06-04)
  • JN.1.59 (2024-06-05)
  • JN.1.7.7 (2024-06-05)
  • JN.1.60 (2024-06-05)
  • JN.1.61 (2024-06-05)
  • JN.1.18.5 (2024-06-07)
  • LS.1 (2024-06-07)
  • KP.2.3.3 (2024-06-07)
  • JN.1.62 (2024-06-08)
  • KP.3.2.5 (2024-06-09)
  • LT.1 (2024-06-10)
  • JN.1.1.9 (2024-06-10)
  • JN.1.16.3 (2024-06-10)
  • JN.1.15.1 (2024-06-10)
  • LU.1 (2024-06-10)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Labelled mutations added for Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1)
  • All 172 Pango lineages designated between 2024-04-13 and 2024-06-10 are now included, unfold below to see a list of all newly included lineages with their designation dates:
  • Fixed a bug that made amino acid gaps on the reference tree be left-aligned instead of right-aligned. This only affected the display of mutations on branches in tree view. The bug existed since switching the default gap alignment from right to left in nextclade v2.
Newly included lineages, with designation date in parentheses
  • KP.4 (2024-04-15)
  • KP.4.1 (2024-04-15)
  • KP.4.2 (2024-04-15)
  • KP.1.2 (2024-04-15)
  • KP.2.3 (2024-04-15)
  • JN.1.47 (2024-04-15)
  • JN.1.47.1 (2024-04-15)
  • JN.1.47.2 (2024-04-15)
  • JN.1.16.2 (2024-04-15)
  • LA.1 (2024-04-15)
  • LA.2 (2024-04-15)
  • JN.1.9.2 (2024-04-15)
  • LB.2 (2024-04-15)
  • JN.1.7.4 (2024-04-15)
  • JN.1.24.1 (2024-04-15)
  • LC.1 (2024-04-15)
  • JN.1.32.1 (2024-04-15)
  • KW.1.2 (2024-04-15)
  • JN.1.8.4 (2024-04-15)
  • JN.1.48 (2024-04-15)
  • JN.1.48.1 (2024-04-15)
  • LB.1 (2024-04-16)
  • XDW (2024-04-18)
  • XDQ.2 (2024-04-18)
  • XDQ.3 (2024-04-18)
  • XDQ.1.1 (2024-05-15)
  • XDK.1.1 (2024-05-15)
  • XDK.1.2 (2024-05-15)
  • XDK.2 (2024-05-15)
  • XDK.3 (2024-05-15)
  • XDR.1 (2024-05-15)
  • KP.2.4 (2024-05-15)
  • KP.2.5 (2024-05-15)
  • KP.2.6 (2024-05-15)
  • KP.2.7 (2024-05-15)
  • KP.2.3.1 (2024-05-15)
  • KP.4.2.1 (2024-05-15)
  • KP.2.8 (2024-05-15)
  • KP.2.9 (2024-05-15)
  • KP.2.10 (2024-05-15)
  • KP.2.11 (2024-05-15)
  • KP.2.12 (2024-05-15)
  • LD.1 (2024-05-15)
  • JN.1.48.2 (2024-05-15)
  • KP.1.1.2 (2024-05-15)
  • LE.1 (2024-05-15)
  • LE.1.1 (2024-05-15)
  • LE.1.2 (2024-05-15)
  • LE.2 (2024-05-15)
  • LF.1 (2024-05-15)
  • LF.1.1 (2024-05-15)
  • JN.1.42.2 (2024-05-15)
  • JN.1.49 (2024-05-15)
  • JN.1.49.1 (2024-05-15)
  • JN.1.49.2 (2024-05-15)
  • KW.1.1.1 (2024-05-15)
  • LG.1 (2024-05-15)
  • JN.1.39.1 (2024-05-15)
  • JN.1.39.2 (2024-05-16)
  • KP.5 (2024-05-16)
  • KP.3.1 (2024-05-16)
  • KP.3.2 (2024-05-16)
  • KP.3.3 (2024-05-16)
  • JN.1.39.3 (2024-05-16)
  • JN.15 (2024-05-16)
  • JN.3.3 (2024-05-16)
  • JN.16 (2024-05-16)
  • JN.17 (2024-05-16)
  • JN.11.1 (2024-05-16)
  • BA.2.86.6 (2024-05-16)
  • JN.18 (2024-05-16)
  • JQ.2.1.1 (2024-05-16)
  • JN.19 (2024-05-16)
  • JN.1.1.8 (2024-05-17)
  • KP.2.13 (2024-05-17)
  • JN.1.50 (2024-05-18)
  • JN.1.23.1 (2024-05-28)
  • JN.1.29.1 (2024-05-28)
  • JN.1.18.3 (2024-05-28)
  • JN.1.18.4 (2024-05-28)
  • LH.1 (2024-05-28)
  • LH.2 (2024-05-28)
  • KP.1.1.3 (2024-05-28)
  • KP.3.1.1 (2024-05-28)
  • KP.2.14 (2024-05-28)
  • JN.1.51 (2024-05-28)
  • JN.1.51.1 (2024-05-28)
  • LJ.1 (2024-05-28)
  • LF.2 (2024-05-28)
  • JN.1.52 (2024-05-28)
  • JN.1.7.5 (2024-05-28)
  • LK.1 (2024-05-28)
  • JN.1.50.1 (2024-05-28)
  • LF.3 (2024-05-28)
  • KP.4.2.2 (2024-05-28)
  • XDK.4 (2024-05-28)
  • XDK.4.1 (2024-05-28)
  • XDK.5 (2024-05-28)
  • XDK.6 (2024-05-28)
  • LL.1 (2024-05-28)
  • LM.1 (2024-05-28)
  • KS.1.1 (2024-05-28)
  • JN.1.53 (2024-05-28)
  • JN.1.53.1 (2024-05-28)
  • LN.1 (2024-05-28)
  • LN.1.1 (2024-05-28)
  • JN.1.54 (2024-05-28)
  • JN.1.54.1 (2024-05-28)
  • LP.1 (2024-05-28)
  • KP.3.4 (2024-05-29)
  • KP.3.2.1 (2024-05-29)
  • KP.2.15 (2024-05-30)
  • KR.1.1 (2024-05-30)
  • KR.1.2 (2024-05-30)
  • KR.3 (2024-05-30)
  • KR.4 (2024-05-30)
  • KR.5 (2024-05-30)
  • KS.1.2 (2024-05-30)
  • JN.1.55 (2024-05-30)
  • JN.1.55.1 (2024-05-30)
  • JN.1.55.2 (2024-05-30)
  • KP.3.2.2 (2024-05-30)
  • JN.1.56 (2024-05-31)
  • JN.1.56.1 (2024-05-31)
  • JN.1.44.1 (2024-05-31)
  • LB.1.1 (2024-06-04)
  • LB.1.2 (2024-06-04)
  • LB.1.2.1 (2024-06-04)
  • LB.1.3 (2024-06-04)
  • LB.1.4 (2024-06-04)
  • LB.1.5 (2024-06-04)
  • LB.1.6 (2024-06-04)
  • KP.2.3.2 (2024-06-04)
  • KP.2.16 (2024-06-04)
  • LF.3.1 (2024-06-04)
  • KP.3.1.2 (2024-06-04)
  • KP.3.1.3 (2024-06-04)
  • KP.3.1.4 (2024-06-04)
  • KP.3.2.3 (2024-06-04)
  • KP.3.2.4 (2024-06-04)
  • LB.1.7 (2024-06-04)
  • LF.1.1.1 (2024-06-04)
  • KP.1.1.4 (2024-06-04)
  • LP.2 (2024-06-04)
  • XDY (2024-06-04)
  • LQ.1 (2024-06-04)
  • LQ.1.1 (2024-06-04)
  • LQ.2 (2024-06-04)
  • LQ.3 (2024-06-04)
  • JN.1.4.8 (2024-06-04)
  • JN.1.7.6 (2024-06-04)
  • JN.1.57 (2024-06-04)
  • JN.1.57.1 (2024-06-04)
  • JN.1.58 (2024-06-04)
  • JN.1.58.1 (2024-06-04)
  • JN.1.58.2 (2024-06-04)
  • LR.1 (2024-06-04)
  • LR.2 (2024-06-04)
  • JN.1.59 (2024-06-05)
  • JN.1.7.7 (2024-06-05)
  • JN.1.60 (2024-06-05)
  • JN.1.61 (2024-06-05)
  • JN.1.18.5 (2024-06-07)
  • LS.1 (2024-06-07)
  • KP.2.3.3 (2024-06-07)
  • JN.1.62 (2024-06-08)
  • KP.3.2.5 (2024-06-09)
  • LT.1 (2024-06-10)
  • JN.1.1.9 (2024-06-10)
  • JN.1.16.3 (2024-06-10)
  • JN.1.15.1 (2024-06-10)
  • LU.1 (2024-06-10)
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