github nextstrain/nextclade_data 2024-04-15--15-08-22Z
on GitHub

latest releases: 2024-11-14--17-22-16Z, 2024-11-05--09-19-52Z, 2024-10-17--16-48-48Z...
7 months ago

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1) are now included.
  • All 83 Pango lineages designated between 2024-02-13 and 2024-04-12 are now included, unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • JN.1.23 (2024-02-20)
  • KP.1 (2024-02-22)
  • JN.1.7.1 (2024-03-01)
  • JN.1.7.2 (2024-03-01)
  • KQ.1 (2024-03-01)
  • JN.1.13.1 (2024-03-01)
  • JN.1.1.5 (2024-03-01)
  • KR.1 (2024-03-04)
  • KP.1.1 (2024-03-04)
  • KP.2 (2024-03-04)
  • JN.1.24 (2024-03-04)
  • XDK.1 (2024-03-04)
  • JN.1.25 (2024-03-04)
  • JN.1.25.1 (2024-03-04)
  • XDQ.1 (2024-03-04)
  • JQ.2 (2024-03-05)
  • JN.13 (2024-03-06)
  • JN.13.1 (2024-03-06)
  • JN.1.1.6 (2024-03-09)
  • JN.1.26 (2024-03-09)
  • JN.1.27 (2024-03-09)
  • JN.1.4.4 (2024-03-09)
  • JN.1.8.2 (2024-03-09)
  • JN.1.28 (2024-03-09)
  • JN.1.1.7 (2024-03-09)
  • JN.1.29 (2024-03-09)
  • JN.1.4.5 (2024-03-14)
  • JN.1.18.1 (2024-03-14)
  • JN.1.30 (2024-03-14)
  • JN.1.31 (2024-03-14)
  • JN.1.16.1 (2024-03-14)
  • KS.1 (2024-03-14)
  • JN.1.4.6 (2024-03-14)
  • JN.1.32 (2024-03-14)
  • GE.1.2.2 (2024-03-17)
  • KT.1 (2024-03-17)
  • KT.1.1 (2024-03-17)
  • KT.1.2 (2024-03-17)
  • KP.3 (2024-03-17)
  • JN.1.33 (2024-03-17)
  • JN.1.34 (2024-03-17)
  • JN.1.35 (2024-03-17)
  • JN.1.36 (2024-03-17)
  • KP.2.1 (2024-03-19)
  • KP.2.2 (2024-03-19)
  • JN.1.30.1 (2024-03-19)
  • JQ.2.1 (2024-03-20)
  • XDD.1.1.1 (2024-03-25)
  • KU.1 (2024-03-25)
  • KU.2 (2024-03-25)
  • JN.1.18.2 (2024-03-25)
  • JN.1.36.1 (2024-03-25)
  • KV.1 (2024-03-25)
  • JN.1.37 (2024-03-25)
  • JN.1.28.1 (2024-03-25)
  • KW.1 (2024-03-25)
  • JN.1.38 (2024-03-25)
  • JN.1.39 (2024-03-25)
  • JN.1.40 (2024-03-25)
  • JN.1.41 (2024-03-25)
  • JN.1.42 (2024-03-25)
  • JN.1.43 (2024-03-25)
  • JN.1.43.1 (2024-03-25)
  • KP.1.1.1 (2024-03-25)
  • JN.1.44 (2024-03-25)
  • XDU (2024-03-26)
  • XDP.1 (2024-03-26)
  • JN.2.2.1 (2024-03-26)
  • JN.1.8.3 (2024-03-29)
  • KY.1 (2024-03-29)
  • JN.14 (2024-03-29)
  • JN.1.45 (2024-03-29)
  • XDV (2024-04-02)
  • XDV.1 (2024-04-02)
  • JN.1.42.1 (2024-04-02)
  • JN.1.46 (2024-04-02)
  • JN.1.4.7 (2024-04-02)
  • KV.2 (2024-04-02)
  • KW.1.1 (2024-04-03)
  • KZ.1 (2024-04-04)
  • KZ.1.1 (2024-04-04)
  • KZ.1.1.1 (2024-04-04)
  • JN.1.7.3 (2024-04-04)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1) are now included.
  • All 83 Pango lineages designated between 2024-02-13 and 2024-04-12 are now included, unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • JN.1.23 (2024-02-20)
  • KP.1 (2024-02-22)
  • JN.1.7.1 (2024-03-01)
  • JN.1.7.2 (2024-03-01)
  • KQ.1 (2024-03-01)
  • JN.1.13.1 (2024-03-01)
  • JN.1.1.5 (2024-03-01)
  • KR.1 (2024-03-04)
  • KP.1.1 (2024-03-04)
  • KP.2 (2024-03-04)
  • JN.1.24 (2024-03-04)
  • XDK.1 (2024-03-04)
  • JN.1.25 (2024-03-04)
  • JN.1.25.1 (2024-03-04)
  • XDQ.1 (2024-03-04)
  • JQ.2 (2024-03-05)
  • JN.13 (2024-03-06)
  • JN.13.1 (2024-03-06)
  • JN.1.1.6 (2024-03-09)
  • JN.1.26 (2024-03-09)
  • JN.1.27 (2024-03-09)
  • JN.1.4.4 (2024-03-09)
  • JN.1.8.2 (2024-03-09)
  • JN.1.28 (2024-03-09)
  • JN.1.1.7 (2024-03-09)
  • JN.1.29 (2024-03-09)
  • JN.1.4.5 (2024-03-14)
  • JN.1.18.1 (2024-03-14)
  • JN.1.30 (2024-03-14)
  • JN.1.31 (2024-03-14)
  • JN.1.16.1 (2024-03-14)
  • KS.1 (2024-03-14)
  • JN.1.4.6 (2024-03-14)
  • JN.1.32 (2024-03-14)
  • GE.1.2.2 (2024-03-17)
  • KT.1 (2024-03-17)
  • KT.1.1 (2024-03-17)
  • KT.1.2 (2024-03-17)
  • KP.3 (2024-03-17)
  • JN.1.33 (2024-03-17)
  • JN.1.34 (2024-03-17)
  • JN.1.35 (2024-03-17)
  • JN.1.36 (2024-03-17)
  • KP.2.1 (2024-03-19)
  • KP.2.2 (2024-03-19)
  • JN.1.30.1 (2024-03-19)
  • JQ.2.1 (2024-03-20)
  • XDD.1.1.1 (2024-03-25)
  • KU.1 (2024-03-25)
  • KU.2 (2024-03-25)
  • JN.1.18.2 (2024-03-25)
  • JN.1.36.1 (2024-03-25)
  • KV.1 (2024-03-25)
  • JN.1.37 (2024-03-25)
  • JN.1.28.1 (2024-03-25)
  • KW.1 (2024-03-25)
  • JN.1.38 (2024-03-25)
  • JN.1.39 (2024-03-25)
  • JN.1.40 (2024-03-25)
  • JN.1.41 (2024-03-25)
  • JN.1.42 (2024-03-25)
  • JN.1.43 (2024-03-25)
  • JN.1.43.1 (2024-03-25)
  • KP.1.1.1 (2024-03-25)
  • JN.1.44 (2024-03-25)
  • XDU (2024-03-26)
  • XDP.1 (2024-03-26)
  • JN.2.2.1 (2024-03-26)
  • JN.1.8.3 (2024-03-29)
  • KY.1 (2024-03-29)
  • JN.14 (2024-03-29)
  • JN.1.45 (2024-03-29)
  • XDV (2024-04-02)
  • XDV.1 (2024-04-02)
  • JN.1.42.1 (2024-04-02)
  • JN.1.46 (2024-04-02)
  • JN.1.4.7 (2024-04-02)
  • KV.2 (2024-04-02)
  • KW.1.1 (2024-04-03)
  • KZ.1 (2024-04-04)
  • KZ.1.1 (2024-04-04)
  • KZ.1.1.1 (2024-04-04)
  • JN.1.7.3 (2024-04-04)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1) are now included.
  • All 83 Pango lineages designated between 2024-02-13 and 2024-04-12 are now included, unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • JN.1.23 (2024-02-20)
  • KP.1 (2024-02-22)
  • JN.1.7.1 (2024-03-01)
  • JN.1.7.2 (2024-03-01)
  • KQ.1 (2024-03-01)
  • JN.1.13.1 (2024-03-01)
  • JN.1.1.5 (2024-03-01)
  • KR.1 (2024-03-04)
  • KP.1.1 (2024-03-04)
  • KP.2 (2024-03-04)
  • JN.1.24 (2024-03-04)
  • XDK.1 (2024-03-04)
  • JN.1.25 (2024-03-04)
  • JN.1.25.1 (2024-03-04)
  • XDQ.1 (2024-03-04)
  • JQ.2 (2024-03-05)
  • JN.13 (2024-03-06)
  • JN.13.1 (2024-03-06)
  • JN.1.1.6 (2024-03-09)
  • JN.1.26 (2024-03-09)
  • JN.1.27 (2024-03-09)
  • JN.1.4.4 (2024-03-09)
  • JN.1.8.2 (2024-03-09)
  • JN.1.28 (2024-03-09)
  • JN.1.1.7 (2024-03-09)
  • JN.1.29 (2024-03-09)
  • JN.1.4.5 (2024-03-14)
  • JN.1.18.1 (2024-03-14)
  • JN.1.30 (2024-03-14)
  • JN.1.31 (2024-03-14)
  • JN.1.16.1 (2024-03-14)
  • KS.1 (2024-03-14)
  • JN.1.4.6 (2024-03-14)
  • JN.1.32 (2024-03-14)
  • GE.1.2.2 (2024-03-17)
  • KT.1 (2024-03-17)
  • KT.1.1 (2024-03-17)
  • KT.1.2 (2024-03-17)
  • KP.3 (2024-03-17)
  • JN.1.33 (2024-03-17)
  • JN.1.34 (2024-03-17)
  • JN.1.35 (2024-03-17)
  • JN.1.36 (2024-03-17)
  • KP.2.1 (2024-03-19)
  • KP.2.2 (2024-03-19)
  • JN.1.30.1 (2024-03-19)
  • JQ.2.1 (2024-03-20)
  • XDD.1.1.1 (2024-03-25)
  • KU.1 (2024-03-25)
  • KU.2 (2024-03-25)
  • JN.1.18.2 (2024-03-25)
  • JN.1.36.1 (2024-03-25)
  • KV.1 (2024-03-25)
  • JN.1.37 (2024-03-25)
  • JN.1.28.1 (2024-03-25)
  • KW.1 (2024-03-25)
  • JN.1.38 (2024-03-25)
  • JN.1.39 (2024-03-25)
  • JN.1.40 (2024-03-25)
  • JN.1.41 (2024-03-25)
  • JN.1.42 (2024-03-25)
  • JN.1.43 (2024-03-25)
  • JN.1.43.1 (2024-03-25)
  • KP.1.1.1 (2024-03-25)
  • JN.1.44 (2024-03-25)
  • XDU (2024-03-26)
  • XDP.1 (2024-03-26)
  • JN.2.2.1 (2024-03-26)
  • JN.1.8.3 (2024-03-29)
  • KY.1 (2024-03-29)
  • JN.14 (2024-03-29)
  • JN.1.45 (2024-03-29)
  • XDV (2024-04-02)
  • XDV.1 (2024-04-02)
  • JN.1.42.1 (2024-04-02)
  • JN.1.46 (2024-04-02)
  • JN.1.4.7 (2024-04-02)
  • KV.2 (2024-04-02)
  • KW.1.1 (2024-04-03)
  • KZ.1 (2024-04-04)
  • KZ.1.1 (2024-04-04)
  • KZ.1.1.1 (2024-04-04)
  • JN.1.7.3 (2024-04-04)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1) are now included.
  • All 83 Pango lineages designated between 2024-02-13 and 2024-04-12 are now included, unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • JN.1.23 (2024-02-20)
  • KP.1 (2024-02-22)
  • JN.1.7.1 (2024-03-01)
  • JN.1.7.2 (2024-03-01)
  • KQ.1 (2024-03-01)
  • JN.1.13.1 (2024-03-01)
  • JN.1.1.5 (2024-03-01)
  • KR.1 (2024-03-04)
  • KP.1.1 (2024-03-04)
  • KP.2 (2024-03-04)
  • JN.1.24 (2024-03-04)
  • XDK.1 (2024-03-04)
  • JN.1.25 (2024-03-04)
  • JN.1.25.1 (2024-03-04)
  • XDQ.1 (2024-03-04)
  • JQ.2 (2024-03-05)
  • JN.13 (2024-03-06)
  • JN.13.1 (2024-03-06)
  • JN.1.1.6 (2024-03-09)
  • JN.1.26 (2024-03-09)
  • JN.1.27 (2024-03-09)
  • JN.1.4.4 (2024-03-09)
  • JN.1.8.2 (2024-03-09)
  • JN.1.28 (2024-03-09)
  • JN.1.1.7 (2024-03-09)
  • JN.1.29 (2024-03-09)
  • JN.1.4.5 (2024-03-14)
  • JN.1.18.1 (2024-03-14)
  • JN.1.30 (2024-03-14)
  • JN.1.31 (2024-03-14)
  • JN.1.16.1 (2024-03-14)
  • KS.1 (2024-03-14)
  • JN.1.4.6 (2024-03-14)
  • JN.1.32 (2024-03-14)
  • GE.1.2.2 (2024-03-17)
  • KT.1 (2024-03-17)
  • KT.1.1 (2024-03-17)
  • KT.1.2 (2024-03-17)
  • KP.3 (2024-03-17)
  • JN.1.33 (2024-03-17)
  • JN.1.34 (2024-03-17)
  • JN.1.35 (2024-03-17)
  • JN.1.36 (2024-03-17)
  • KP.2.1 (2024-03-19)
  • KP.2.2 (2024-03-19)
  • JN.1.30.1 (2024-03-19)
  • JQ.2.1 (2024-03-20)
  • XDD.1.1.1 (2024-03-25)
  • KU.1 (2024-03-25)
  • KU.2 (2024-03-25)
  • JN.1.18.2 (2024-03-25)
  • JN.1.36.1 (2024-03-25)
  • KV.1 (2024-03-25)
  • JN.1.37 (2024-03-25)
  • JN.1.28.1 (2024-03-25)
  • KW.1 (2024-03-25)
  • JN.1.38 (2024-03-25)
  • JN.1.39 (2024-03-25)
  • JN.1.40 (2024-03-25)
  • JN.1.41 (2024-03-25)
  • JN.1.42 (2024-03-25)
  • JN.1.43 (2024-03-25)
  • JN.1.43.1 (2024-03-25)
  • KP.1.1.1 (2024-03-25)
  • JN.1.44 (2024-03-25)
  • XDU (2024-03-26)
  • XDP.1 (2024-03-26)
  • JN.2.2.1 (2024-03-26)
  • JN.1.8.3 (2024-03-29)
  • KY.1 (2024-03-29)
  • JN.14 (2024-03-29)
  • JN.1.45 (2024-03-29)
  • XDV (2024-04-02)
  • XDV.1 (2024-04-02)
  • JN.1.42.1 (2024-04-02)
  • JN.1.46 (2024-04-02)
  • JN.1.4.7 (2024-04-02)
  • KV.2 (2024-04-02)
  • KW.1.1 (2024-04-03)
  • KZ.1 (2024-04-04)
  • KZ.1.1 (2024-04-04)
  • KZ.1.1.1 (2024-04-04)
  • JN.1.7.3 (2024-04-04)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Nextstrain clades 24A (JN.1) and 24B (JN.1.11.1) are now included.
  • All 83 Pango lineages designated between 2024-02-13 and 2024-04-12 are now included, unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • JN.1.23 (2024-02-20)
  • KP.1 (2024-02-22)
  • JN.1.7.1 (2024-03-01)
  • JN.1.7.2 (2024-03-01)
  • KQ.1 (2024-03-01)
  • JN.1.13.1 (2024-03-01)
  • JN.1.1.5 (2024-03-01)
  • KR.1 (2024-03-04)
  • KP.1.1 (2024-03-04)
  • KP.2 (2024-03-04)
  • JN.1.24 (2024-03-04)
  • XDK.1 (2024-03-04)
  • JN.1.25 (2024-03-04)
  • JN.1.25.1 (2024-03-04)
  • XDQ.1 (2024-03-04)
  • JQ.2 (2024-03-05)
  • JN.13 (2024-03-06)
  • JN.13.1 (2024-03-06)
  • JN.1.1.6 (2024-03-09)
  • JN.1.26 (2024-03-09)
  • JN.1.27 (2024-03-09)
  • JN.1.4.4 (2024-03-09)
  • JN.1.8.2 (2024-03-09)
  • JN.1.28 (2024-03-09)
  • JN.1.1.7 (2024-03-09)
  • JN.1.29 (2024-03-09)
  • JN.1.4.5 (2024-03-14)
  • JN.1.18.1 (2024-03-14)
  • JN.1.30 (2024-03-14)
  • JN.1.31 (2024-03-14)
  • JN.1.16.1 (2024-03-14)
  • KS.1 (2024-03-14)
  • JN.1.4.6 (2024-03-14)
  • JN.1.32 (2024-03-14)
  • GE.1.2.2 (2024-03-17)
  • KT.1 (2024-03-17)
  • KT.1.1 (2024-03-17)
  • KT.1.2 (2024-03-17)
  • KP.3 (2024-03-17)
  • JN.1.33 (2024-03-17)
  • JN.1.34 (2024-03-17)
  • JN.1.35 (2024-03-17)
  • JN.1.36 (2024-03-17)
  • KP.2.1 (2024-03-19)
  • KP.2.2 (2024-03-19)
  • JN.1.30.1 (2024-03-19)
  • JQ.2.1 (2024-03-20)
  • XDD.1.1.1 (2024-03-25)
  • KU.1 (2024-03-25)
  • KU.2 (2024-03-25)
  • JN.1.18.2 (2024-03-25)
  • JN.1.36.1 (2024-03-25)
  • KV.1 (2024-03-25)
  • JN.1.37 (2024-03-25)
  • JN.1.28.1 (2024-03-25)
  • KW.1 (2024-03-25)
  • JN.1.38 (2024-03-25)
  • JN.1.39 (2024-03-25)
  • JN.1.40 (2024-03-25)
  • JN.1.41 (2024-03-25)
  • JN.1.42 (2024-03-25)
  • JN.1.43 (2024-03-25)
  • JN.1.43.1 (2024-03-25)
  • KP.1.1.1 (2024-03-25)
  • JN.1.44 (2024-03-25)
  • XDU (2024-03-26)
  • XDP.1 (2024-03-26)
  • JN.2.2.1 (2024-03-26)
  • JN.1.8.3 (2024-03-29)
  • KY.1 (2024-03-29)
  • JN.14 (2024-03-29)
  • JN.1.45 (2024-03-29)
  • XDV (2024-04-02)
  • XDV.1 (2024-04-02)
  • JN.1.42.1 (2024-04-02)
  • JN.1.46 (2024-04-02)
  • JN.1.4.7 (2024-04-02)
  • KV.2 (2024-04-02)
  • KW.1.1 (2024-04-03)
  • KZ.1 (2024-04-04)
  • KZ.1.1 (2024-04-04)
  • KZ.1.1.1 (2024-04-04)
  • JN.1.7.3 (2024-04-04)
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